- Probe CUST_20715_PI390587928
- Source Contig U35_47302
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20715_PI390587928 | Hv_44K_v2 | TTGCTAGCATGGGTATCTATGTTATTAGCAAACATGTGATGCTTCAACTTCTCCGTGAGC | 516 | GeneList: darkolivegreen MasterList: Starch_synthesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.016 | 0.036 | 0.601 | 2.123 | 1.533 | 2.559 |
| Raw | 60.236 | 211.983 | 3219.907 | 18276.533 | 4445.287 | 8114.563 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK253094.1 | 2107 | 7e-23 | 1096 - 1155 | 98 | 59 / 60 | plus | ABC02267 |
| MLOC | MLOC_36959.1 | 1007 | 7e-23 | 221 - 280 | 98 | 59 / 60 | minus | ABC02267 |
| MLOC | MLOC_36959.3 | 959 | 7e-23 | 8 - 67 | 98 | 59 / 60 | minus | ABC02267 |
| MLOC | MLOC_36959.2 | 1245 | 7e-23 | 103 - 162 | 98 | 59 / 60 | minus | ABC02267 |
| JLOC1 | JLOC1_23864.2 | 1158 | 4e-23 | 876 - 935 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23864.1 | 1357 | 4e-23 | 1075 - 1134 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC48210 | 579 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02267 | 1991 | 1e-23 | 955 - 1014 | 98 | 59 / 60 | plus | ABC02267 |
| Harvest21 | ABC02266 | 1792 | 1e-23 | 791 - 850 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_47302 | 579 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_732 | 2022 | 1e-23 | 987 - 1046 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_731 | 1467 | 1e-23 | 791 - 850 | 98 | 59 / 60 | plus |
Contig Sequence (579 bp)
>U35_47302 579 Hv_44K_v2 ACATCACTCAATATCTATATCCTTCCATTTTATATCCCTCGGTGATGGATGTACCTTTGG CATCTAAAGTTCCCTTGCCCTCCCCTTCCAAGCATGAACAATGCAACGCTTATAGTCATA AGAGCTCATCGAAGCATGCAGATCTCAATCCCCATGCTATTGATAGTGTTCTCGGTATCA TTCTTGGAGGTGGTGCAGGGACTAGATTGTATCCCCTGACGAAGAAGCGTGCAAAGCCTG CAGTGCCATTGGGTGCCAACTACAGGCTTATTGATATTCCTGTCAGTAATTGTCTGAACA GCAACATATCAAAGATCTATGTGCTTACACAGTTCAACTCAGCTTCTCTTAATCGTCATC TCTCACGAGCCTATGGGAGCAACATTGGAGGTTACAAGAATGAAGGATTTGTTGAAGACC TTGCTGCACAGCAGAGCCCAGATAACCCTGACTGGTTCCAGGTTGATACGACCATACTTG GCCTTGAAGATGCGAGGGCAAAGGAAATGCCTTATATTGCTAGCATGGGTATCTATGTTA TTAGCAAACATGTGATGCTTCAACTTCTCCGTGAGCAAT
Homology of Contig U35_47302 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g25734.2 | 480 | 6e-64 | protein|glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g22330.1 | 518 | 2e-62 | |
| Arabidopsis v10 | AT5G48300.1 | 520 | 3e-60 | | Symbols: ADG1, APS1 | ADP glucose pyrophosphorylase 1 | chr5:19570326-19572557 FORWARD LENGTH=520 |