- Probe CUST_20709_PI390587928
- Source Contig U35_47306
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20709_PI390587928 | Hv_44K_v2 | GGCGAAGATTGTAGATTTTGACCTGAAGAAAATTGATTCGCCGTCTAAAGAAGTTAATCA | 534 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374164 | 1920 | 2e-24 | 579 - 638 | 100 | 60 / 60 | plus | ABC25658 |
| MLOC | AK375821 | 1837 | 2e-24 | 619 - 678 | 100 | 60 / 60 | plus | ABC25658 |
| MLOC | MLOC_70506.3 | 1783 | 2e-24 | 610 - 669 | 100 | 60 / 60 | plus | ABC25658 |
| MLOC | MLOC_70506.1 | 1717 | 2e-24 | 672 - 731 | 100 | 60 / 60 | plus | ABC25658 |
| MLOC | MLOC_70506.2 | 2297 | 2e-24 | 626 - 685 | 100 | 60 / 60 | plus | ABC25658 |
| MLOC | MLOC_75180.2 | 4477 | 7e-23 | 3272 - 3331 | 98 | 59 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 ABC24078 |
| MLOC | MLOC_75180.4 | 1656 | 7e-23 | 486 - 545 | 98 | 59 / 60 | plus | ABC24078 |
| MLOC | MLOC_75180.3 | 4541 | 7e-23 | 3268 - 3327 | 98 | 59 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 ABC24078 |
| JLOC1 | JLOC1_46793.2 | 1848 | 8e-25 | 610 - 669 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46793.1 | 1814 | 8e-25 | 610 - 669 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50143.3 | 1594 | 4e-23 | 400 - 459 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50143.2 | 1817 | 4e-23 | 623 - 682 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50143.1 | 1813 | 4e-23 | 619 - 678 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC48223 | 599 | 3e-25 | 535 - 594 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC39201 | 639 | 2e-21 | 559 - 617 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_47306 | 599 | 3e-25 | 535 - 594 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43043 | 639 | 2e-21 | 559 - 617 | 97 | 58 / 60 | plus |
Contig Sequence (599 bp)
>U35_47306 599 Hv_44K_v2 GGAAAGCGGGCCGAGCTCCGCCGATCTTGCAGTGGCAGCAATGGCCGCTCCTCCCCCTCT AGATCCGCAGCTGCAGCCCATGACGGACGGGTCGGCGGCGAGCAGGCTGGAGCACCACCA CCACGGCGCCGGCGACGGTCCTCCCTTCCGGATCGAGGACCTTCCCGCGGAGATTCTACA TGTTATAGTGTCACTGCTCCCACTAAAAGAGGCTGTGAGGACCAGCATTATTTCAACAAG TTGGAAAATGCTCTGGACATTCCACCGTAATCTGTGTTTTTGTGGTCCCAATGAACTGGA TGATGACCCCTCAATGCCCCCTTTGGAGTCTGATGAGGAGGCCGCCGTTGATGAATATGT CAAAACATCACAAGCTAAGCTGAAACTAAAACGAGATAAGTTCATTGAGGCTGTGAATTG TGTTATTCAACGGCATAGTGGGGTAGGAGTCAGTAAGTTTAGCATCAGGTGTGGCCTGCA CAAGGAGGACTTTGGTCATCTTGTTAGATGGATTAGTTTTGCCGCTTTGTCGAGGGCGAA GATTGTAGATTTTGACCTGAAGAAAATTGATTCGCCGTCTAAAGAAGTTAATCAGTTCC
Homology of Contig U35_47306 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |