barSeed - Barley Seed Development Database

Probe CUST_20708_PI390587928

Source Contig U35_47307

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20708_PI390587928	Hv_44K_v2	AAGCATCACAAGAAAATCATACTGAGCGTCTCCACCCTCATTGCCATCGCGGGTGGCGCT	519	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.094	1.185	1.748	1.318	0.606	0.563
Raw	14.627	22.412	32.080	35.550	4.883	5.720

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36364.1	3019	2e-24	1566 - 1625	100	60 / 60	plus	ABC19027
JLOC1	JLOC1_23403.1	2985	8e-25	1525 - 1584	100	60 / 60	plus
Harvest21	ABC48225	579	3e-25	520 - 579	100	60 / 60	plus
Harvest35	U35_47307	579	3e-25	520 - 579	100	60 / 60	plus

Contig Sequence (579 bp)

>U35_47307 579 Hv_44K_v2
GCGATGAGGCTGCTGGAGGCGCTCGACGTGAGCGCTAACACGTTAACTGGAAGCGTGCCA
CCGGAGATTGGCGGTGCGGTGGCGCTCAGGGTGCTGAGGCTGGGGAACAATTCGCTCACC
GGCGGCATCCCGGCACAGATTGGGAGCTGCAGTTCCCTCGTTGCACTGGATTTGTCGCAC
AACGACATCACAGGGCCGATTCCAAGCACCCTGGGGAACCTCACCAGCCTTCAGGCTGTT
GATCTCTCCCAGAACAAGCTGAATGGGACCCTACCAGTGGAGCTATCTAATCTGCCCAGC
TTGCACGTCTTTGACGTCTCCCACAACTTGCTATCAGGAAATCTCCCCAACAGCCGTTTC
TTCGACAACATCCCTGACTACTTCCTAGCAGACAATTCTGGCCTATGCAGCTCCCGGAAG
AACAATTCCTGCGGTGCGGTCATGCCGAAGCCGATTGTACTCAACCCCAATTCCTCATCA
AACCCCTTGTCACAATCCTCACCAAGCTCCCCTAGCAGCAAGCATCACAAGAAAATCATA
CTGAGCGTCTCCACCCTCATTGCCATCGCGGGTGGCGCT

Homology of Contig U35_47307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g60670.1	948	1e-76	protein\|receptor-like protein kinase precursor, putative, expressed
Brachypodium v1_2	Bradi2g53540.1	933	1e-77
Arabidopsis v10	None