barSeed - Barley Seed Development Database

Probe CUST_20705_PI390587928

Source Contig U35_47309

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20705_PI390587928	Hv_44K_v2	AAGTTCGGGTTGCCGATGGCGTTCACGGTGACCATGATGGCGTGGAGCGTCCTCGAGTAC	266	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.507	1.384	1.517	0.883	0.233	0.296
Raw	262.057	387.765	368.508	334.929	31.929	44.306

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62754.2	792	2e-24	293 - 352	100	60 / 60	plus	None
MLOC	MLOC_62754.1	2228	2e-24	354 - 413	100	60 / 60	plus	ABC10396
JLOC1	JLOC1_41093.1	2166	8e-25	292 - 351	100	60 / 60	plus
Harvest21	ABC48228	565	3e-25	267 - 326	100	60 / 60	plus
Harvest35	U35_47309	565	3e-25	267 - 326	100	60 / 60	plus

Contig Sequence (565 bp)

>U35_47309 565 Hv_44K_v2
CCCTCTTTCGCTAGCCTCTAGCCATGGGTGTCGTCGTTGTCGTGGTGCTTGCCGCCATGG
TGCAGGTGGCGTACTGCGGGGGCGGTGGCACCACCCCGAACTACCGCGAGGCGCTGGCCA
AGAGCATCCTCTTCCTGGAAGCCCAGCGGTCCGGCGTGCTCCCGGCCAGCCAAAGGGTCA
GCTGGAGGGCCAACTCCGGCCTGCTCGACGGGAAGGCCAACGGGGTGGATCTCACGGGCG
GCTACTACGACGCCGGCGACAACGTCAAGTTCGGGTTGCCGATGGCGTTCACGGTGACCA
TGATGGCGTGGAGCGTCCTCGAGTACGGCGGGCAGATGGAGGCGGCCGGCGAGCTCGGCA
ACGCCCTCGAGGCCGTCAAGTGGGGCACCGACTACTTCGTCAAGGCGCACCCGGAGGCCA
AGGTGCTCTATGGAGAGGTGGGAGACGGTGACACCGACCACGGCTGCTGGCAGCGGCCGG
AGGACATGTCGACGAGCCGTCAGGCGTACCGCCTCGACCCCCAGCGCCCGGGGTCCGACC
TCGCCGGGGAGACCGCCGCCGCAAT

Homology of Contig U35_47309 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12030.1	641	1e-82	protein\|endoglucanase precursor, putative, expressed
Brachypodium v1_2	Bradi2g07150.1	629	6e-86
Arabidopsis v10	AT1G64390.1	620	1e-76	\| Symbols: AtGH9C2, GH9C2 \| glycosyl hydrolase 9C2 \| chr1:23911329-23914642 FORWARD LENGTH=620