barSeed - Barley Seed Development Database

Probe CUST_20682_PI390587928

Source Contig U35_47311

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20682_PI390587928	Hv_44K_v2	ATCAGTTCGTTCGACAGGGCGCTGCGGCTGATGAAAGACTCGGGCATAAAGATCACCAGG	420	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10075.2	2145	2e-24	1636 - 1695	100	60 / 60	minus	ABC48234
MLOC	MLOC_10075.7	1326	2e-24	694 - 753	100	60 / 60	minus	None
MLOC	MLOC_10075.1	2493	2e-24	1783 - 1842	100	60 / 60	minus	ABC48234
MLOC	MLOC_10075.8	589	2e-24	145 - 204	100	60 / 60	minus	None
MLOC	MLOC_10075.3	2274	2e-24	1523 - 1582	100	60 / 60	minus	ABC48234
MLOC	MLOC_10075.4	2277	2e-24	1523 - 1582	100	60 / 60	minus	ABC48234
MLOC	MLOC_10075.6	1922	2e-24	1446 - 1505	100	60 / 60	minus	ABC48234
MLOC	MLOC_10075.5	1859	2e-24	1446 - 1505	100	60 / 60	minus	ABC48234
JLOC1	JLOC1_6568.6	2241	8e-25	458 - 517	100	60 / 60	plus
JLOC1	JLOC1_6568.5	2233	8e-25	450 - 509	100	60 / 60	plus
JLOC1	JLOC1_6568.4	2236	8e-25	453 - 512	100	60 / 60	plus
JLOC1	JLOC1_6568.3	2233	8e-25	450 - 509	100	60 / 60	plus
JLOC1	JLOC1_6568.2	2138	8e-25	355 - 414	100	60 / 60	plus
JLOC1	JLOC1_6568.1	2135	8e-25	352 - 411	100	60 / 60	plus
Harvest21	ABC48233	495	3e-25	421 - 480	100	60 / 60	plus
Harvest35	U35_47311	495	3e-25	421 - 480	100	60 / 60	plus

Contig Sequence (495 bp)

>U35_47311 495 Hv_44K_v2
CCCTGCCGGGCGACCGACGGTACCGCCAACCTCCTTCGCCCGCCGGCCGCCGCCCAGCTC
AGAGCGGTGAGGCCCTCGCCCTCATCTCAGGGGCATCGACCGCGGGGGTCCCTCCGCACG
GCAGGGAAGAACAGCAGATGCGCAGAGAGCTGAAGCAGCAGATGCTCCAACATGCTCCAT
GCTAAGGAGACACTGAGGAAGATGTACTCAGTCGCCAAGACCTACTACTGCGGGGGGCTA
GCGGCCCCCAATCCTTTTCCAGCAGCGTTGGATCTCAGGCATTCCCTCAGCTCCTCAAGG
ACAGCGCCGGGGTACGCTAACCCATGCAGGGCCCGCTCGTACACGCGAAGTGCGCTCGCG
GGAGGTCCCGCAGCCGGCCAAGAGATTGTGATTGCTCTGGGAAGCAATGTGGGGGATAGG
ATCAGTTCGTTCGACAGGGCGCTGCGGCTGATGAAAGACTCGGGCATAAAGATCACCAGG
CACGCCTGTCTGTAC

Homology of Contig U35_47311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None