- Probe CUST_20680_PI390587928
- Source Contig U35_47312
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20680_PI390587928 | Hv_44K_v2 | CTTTGTGTTCCTTTACTGAAGAACAGGCAAACGTCGAAATAATAGTATCCTTATGTGAAA | 14 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.220 | 0.225 | 0.827 | 1.619 | 1.351 | 1.909 |
| Raw | 2423.916 | 3560.527 | 12450.287 | 36881.167 | 10978.690 | 16980.200 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7060.2 | 2466 | 9e-22 | 196 - 253 | 98 | 57 / 58 | minus | ABC04278 ABC40520 |
| MLOC | MLOC_7060.3 | 1709 | 9e-22 | 111 - 168 | 98 | 57 / 58 | minus | ABC04278 ABC40520 |
| MLOC | MLOC_7060.1 | 2415 | 9e-22 | 243 - 300 | 98 | 57 / 58 | minus | ABC04278 ABC40520 |
| MLOC | MLOC_7060.4 | 1922 | 3e-21 | 1866 - 1922 | 98 | 56 / 57 | plus | ABC04278 ABC40520 |
| JLOC1 | JLOC1_4653.1 | 2483 | 5e-22 | 2194 - 2251 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC48235 | 510 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC04278 | 2420 | 4e-24 | 2025 - 2082 | 100 | 58 / 58 | plus | ABC04278 |
| Harvest21 | ABC32442 | 149 | 6e-22 | 15 - 74 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_47312 | 510 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_15973 | 2412 | 3e-25 | 2025 - 2084 | 100 | 60 / 60 | plus |
Contig Sequence (510 bp)
>U35_47312 510 Hv_44K_v2 TTTTTTTTTTTTTTTTTCACATAAGGATACTATTATTTCGACGTTTGCCTGTTCTTCAGT AAAGGAACACAAAGGAAAACAGGAAGGCAGCCTCCTGTAATTCAGATGCAGTGATTCACG CTCAGTTGAAATGGTAGAGAGGCAGCTCGGTATTGAGAGGGTGGGACATCACTGTGAGCA CATGTGTCACCGAGATCATCGAGCTTATCGCCGCTTTGAGGGTATCCCTCGAGCAACCGG GCTTAACGATCGTCTTCACCTTGTCAAGATATAGCTTTAGCATTTCGATGTCGCCCATGT AGTCCTGGTCTTCAATGGTCAGTGTGATGGGCTTTGCATCCGAACCAGGTCCTTCAAATT GAATACCTCCAGGAGTCTCATATGCCTTCCCTTTCAGGTCGATAGGAGAAGGATGAATGG CAGGCTTTCCAATAGGAATTGCCCCAGGGCCACGTAAATGCCTCCTGATACTCATCATTG CAGTTAGTGGGGCAGCAGCACATCGCCACT
Homology of Contig U35_47312 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g25720.1 | 618 | 7e-69 | protein|pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed |
| Brachypodium v1_2 | Bradi3g22340.1 | 618 | 7e-73 | |
| Arabidopsis v10 | None |