barSeed - Barley Seed Development Database

Probe CUST_20668_PI390587928

Source Contig U35_37395

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20668_PI390587928	Hv_44K_v2	ACTTAGATGCTGCAATGTACATAGGCTGGTGACTGGTGAGATGAGAAACATACCGAGTGA	202	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.965	2.403	1.921	1.328	0.690	0.531
Raw	94.890	393.788	255.255	274.827	51.360	42.980

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248816.1	878	2e-24	661 - 720	100	60 / 60	plus	None
MLOC	MLOC_40417.1	591	2e-24	311 - 370	100	60 / 60	minus	None
JLOC1	JLOC1_26413.1	486	8e-25	203 - 262	100	60 / 60	minus
Harvest35	U35_37395	309	3e-25	203 - 262	100	60 / 60	plus

Contig Sequence (309 bp)

>U35_37395 309 Hv_44K_v2
CACGCGTCCGGGATGATCGAGATCGAGCTGGAGGAGGACAACTCATCGAGATCGACATCT
CGAGGTGCCGGTGATGGATTACCCCGACATTCCGACTGGTCCCCCCACCCCCTTGTTTCT
CTTGCCTTGGTTTTGACTTCAAGAAAATGCATTTTGCTGATTCGGCGTGTGAATTCGAGT
GCCGTTCTTTATTCTATCTAGTACTTAGATGCTGCAATGTACATAGGCTGGTGACTGGTG
AGATGAGAAACATACCGAGTGAGGAAGGCTTGCTAAAAAAAAAAAAAAATTTAAAAAAAA
AAAAAAAAA

Homology of Contig U35_37395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None