barSeed - Barley Seed Development Database

Probe CUST_20665_PI390587928

Source Contig U35_37398

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20665_PI390587928	Hv_44K_v2	TGATGGATCGCCTGTAGAACAAGACCGTGAATCAAGTGAACTTGTGATGTATTGAAAAAA	10	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.686	2.598	1.834	1.090	0.398	0.443
Raw	6639.272	38979.337	23519.000	22739.117	2801.780	3419.307

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44080.1	2243	9e-22	51 - 105	100	55 / 55	minus	ABC05164 ABC44958
JLOC1	JLOC1_28535.1	2268	5e-22	2171 - 2225	100	55 / 55	plus
Harvest21	ABC05164	2164	1e-23	2056 - 2115	98	59 / 60	plus	ABC05164
Harvest35	U35_37398	559	3e-25	11 - 70	100	60 / 60	minus
Harvest35	U35_48806	537	1e-23	12 - 71	98	59 / 60	minus
Harvest35	U35_1469	754	1e-23	658 - 717	98	59 / 60	plus
Harvest35	U35_36474	197	2e-22	104 - 158	100	55 / 55	plus
Harvest35	U35_1468	2177	2e-22	2095 - 2149	100	55 / 55	plus

Contig Sequence (559 bp)

>U35_37398 559 Hv_44K_v2
CTTTTTTTTTTTTTTTCAATACATCACAAGTTCACTTGATTCACGGTCTTGTTCTACAGG
CGATCCATCACCCCCGCCACATGCTCGGACCGCGAGCTCCATCCCACGCACACGCACACA
CAACAACACTGAAGAAACGTACTACAACACGTACACAACAACAGCACCGGCCGCGGCGCC
AATGGCATATGGCTCATCAGTCCGAGGACACGCGCACACGCATACGCACACGCACCCACC
ACGGCCGAACCAGCTAGCGCGAGCGGCGACGGCTAGCACGGGACCAGAGTCCCGTTGGCG
TTCCCGTTCCCGTTCGCCGTGCCGTTCCCGTTGGCTTTCCCGTTGGCCACCGCCCCGTTA
CCGTTGCCGTTGGCGTGGGCATGAGCGGGGGTGGCATCGTTGTGGGAGGCGATGAGCCGG
CCGGAGGGGTCGTTGGAGGCCTTCCACTGGGCCACCCACTCGATGGCCGCCGGCGTGCTG
CACGCGATGCTCGGACCCCACGGNACCGTCTCCCTCGCCGACTCCTGAGGGTAGAGCCTC
TCGAAGATCATCCGGTAGT

Homology of Contig U35_37398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None