barSeed - Barley Seed Development Database

Probe CUST_20660_PI390587928

Source Contig U35_49378

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20660_PI390587928	Hv_44K_v2	ATCATCATAACGCGAGAGGGGGAAAAGCCACACTTGCTCAAACTTGACGCTTACAAATGT	25	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.661	2.294	1.164	0.757	0.404	0.480
Raw	331.224	445.569	198.798	211.250	37.571	49.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53883.2	3602	2e-24	3275 - 3334	100	60 / 60	plus	ABC51047
JLOC1	JLOC1_34646.4	3496	8e-25	3202 - 3261	100	60 / 60	plus
JLOC1	JLOC1_34646.3	3563	8e-25	3269 - 3328	100	60 / 60	plus
JLOC1	JLOC1_34646.1	3383	8e-25	3089 - 3148	100	60 / 60	plus
Harvest21	ABC51047	295	3e-25	26 - 85	100	60 / 60	plus	ABC51047
Harvest35	U35_49378	295	3e-25	26 - 85	100	60 / 60	plus

Contig Sequence (295 bp)

>U35_49378 295 Hv_44K_v2
AACACGCACGTGCCGGGGAGTACATATCATCATAACGCGAGAGGGGGAAAAGCCACACTT
GCTCAAACTTGACGCTTACAAATGTCACAGAGACGCCGACGCTTCTTCCATGGCATCAAG
ATATGTAAATCAATGATGGAGACTCACTGCACCCGCGCGTGGTGAGCCTGCGGTGCACGT
ATGCGATCCATCCATTGTAATAAAGCTCTCTCCGACGACGGCTCCAGCCCTCGGCGCTCA
CCACGAGCGGACGATTTCAATATTTTGACCCTTTTTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_49378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None