barSeed - Barley Seed Development Database

Probe CUST_2065_PI390587928

Source Contig U35_20738

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2065_PI390587928	Hv_44K_v2	GTATGACTGGAGTTGGAGATTGTAAACGAACAGATACTTCTCTTTTCAGTTTTGTTTCAA	556	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.345	4.571	1.323	0.797	0.942	0.839
Raw	32.129	58.305	13.097	12.114	4.173	3.445

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33388.1	500	6e-24	127 - 185	100	59 / 59	minus	ABC13803
JLOC1	JLOC1_21637.1	453	3e-24	93 - 151	100	59 / 59	minus
Harvest21	ABC35047	142	3e-25	68 - 127	100	60 / 60	plus
Harvest35	U35_20738	631	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_20738 631 Hv_44K_v2
GAGAGGTTGAGAGGTCAAGATTAGGCTGAAGACGCCCACACACACCCACCCATCATCGTC
CCTCACCAACCCCTCCTCTCACGACCATGAGCAGCTCACGGGTGGAAGGCCTCATCCCCT
TCATCTACAAGGCCATCAAGGACCACCGCCGGAGCAGCAGCCGGGCCGCCTACCGAGACG
CGGAGGCGGAGGACGCCGTGGACCTCGGCGACACGGACCAGAGGCGGCGCTGGCTGGAGC
AGGAGCTGCGGTCACCGCTCCGCGCCGCCGCCGCCGCCCCGGCGTCGACGCAGCGACACG
GGCGGAACCGGTCGCTGGAGGAGCTGGCGGGCCAGGTGGGGCTCTCGCCGGGCCGGCGGC
TGCCGCTGCCAAAGGCCAGGAGCGTCCGCGCCTTCGCCTGCATCGGTGCCGGCGCCGCGT
GACCGCTGCCCCGCCCCAGCACGCCGGCGCATAGCCCGTAGTCCGGTAGACGTGGGTGGA
TTCATGCTTTGTAGGTCAAGTGCAGTAGTGTAAGTTTTGGTTGAAGCTGTGCATACGTAC
GTATGAGCGATTCGTTGTATGACTGGAGTTGGAGATTGTAAACGAACAGATACTTCTCTT
TTCAGTTTTGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20738 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None