barSeed - Barley Seed Development Database

Probe CUST_20654_PI390587928

Source Contig U35_49388

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20654_PI390587928	Hv_44K_v2	TTACAGTACAATATCTAACACCTAAAAAGTGCGTTGCTGCTGAAGATAAGGCTGTTTGCT	304	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.554	1.611	1.209	0.662	0.332	0.239
Raw	3046.180	4832.737	3214.157	2663.740	476.583	383.519

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4294.1	2520	7e-23	2155 - 2211	100	57 / 57	plus	None
JLOC1	JLOC1_2650.3	2455	4e-23	2118 - 2174	100	57 / 57	plus
JLOC1	JLOC1_2650.2	2464	4e-23	2127 - 2183	100	57 / 57	plus
JLOC1	JLOC1_2650.1	2471	4e-23	2134 - 2190	100	57 / 57	plus
Harvest21	ABC51066	367	3e-25	305 - 364	100	60 / 60	plus
Harvest35	U35_49388	367	3e-25	305 - 364	100	60 / 60	plus

Contig Sequence (367 bp)

>U35_49388 367 Hv_44K_v2
GAGGCTGTCAGAGGTCTCATTCAGGACCACATTGTTGGTGCTGTTCTTCTCACAAAAGTG
GGCACATTATTAAGCCGTGAGGAATATAGTCAGCTTGTCTATGGGTCTTGTGTGTCCTCA
GCTCGAAGTCCTTGTCAATCTGGTAAAAGGGTATCTATTATGAATGATGATGATACATTA
GAACTTCTTAGTCCAGCTATTTTGAAGCCAAAGCTGCTGTGGACGGGAAAACAGGTCATA
ACAACCATCTTGAACCATTTAACAAAAGGTCACCCACCATTTACTGTGGAGATGGAAGGG
AAGATTACAGTACAATATCTAACACCTAAAAAGTGCGTTGCTGCTGAAGATAAGGCTGTT
TGCTCAG

Homology of Contig U35_49388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g02620.1	1074	9e-56
Arabidopsis v10	None