barSeed - Barley Seed Development Database

Probe CUST_20643_PI390587928

Source Contig U35_8304

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20643_PI390587928	Hv_44K_v2	GATACAGTCCTGTACTGTGATGTCCGGCTCACAAAGGATGGCCTTGGCGTCTGCCTACCA	493	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4597.1	2871	2e-24	2163 - 2222	100	60 / 60	minus	ABC07184 ABC14476
JLOC1	JLOC1_2888.1	3046	8e-25	583 - 642	100	60 / 60	plus
Harvest21	ABC23785	552	1e-24	494 - 552	100	59 / 59	plus
Harvest35	U35_8304	553	3e-25	494 - 553	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_8304 553 Hv_44K_v2
TCCTGCCCTGCCTCTTCCCCTCTGGTCTCCTCTCATCTACCATTCCTCTCCCCTCCCCAG
CATAAACACAGCTCAGCAGGCCCCATCTCCAATCTCCATTCCATTCTCTCTCTCTCCCTC
CGGGCCGGGGCTTAAATCCAGCACGGCAATTGCCTCGCATTGTTCCCGAGGACTCCTTGG
TTCTGGCTGCGTCGTACCAGGGACAGGGTAGCGGTGCCGTTCTTGGAGCGCTGTTCCCGG
GCAGCTGCTTGAGGCCAGCCGTCCCGTCAGGGTGCTGTTCGCCGGCGGCGAGGCAATGGG
GAGCGGCCGCGTCTGCTACGTTGTCGCGTCCGTCGTGTTGCTCTGGCTGGGCGTGGCCAC
TGCGCAGGGTGACTCTCCTTGGAAGACGCTCAGCGGCAATGCTCCGGCGATCATAGCCAA
GGGTGGATTTTCAGGCTTATTCCCCGACTCTAGCGAATTCGCTTACCAGTTCGCGATGAT
TGCGAGCTCGCCCGATACAGTCCTGTACTGTGATGTCCGGCTCACAAAGGATGGCCTTGG
CGTCTGCCTACCA

Homology of Contig U35_8304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None