barSeed - Barley Seed Development Database

Probe CUST_2063_PI390587928

Source Contig U35_32711

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2063_PI390587928	Hv_44K_v2	TTTTGTGGACAAAGTTTGAAAGCTATAACGATGCAGCAAAGCTGACCGATATATCTTATA	468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67565.1	1622	2e-24	68 - 127	100	60 / 60	minus	ABC23733
MLOC	MLOC_67565.2	1543	2e-24	53 - 112	100	60 / 60	minus	ABC23733
JLOC1	JLOC1_44628.2	1593	8e-25	1433 - 1492	100	60 / 60	plus
JLOC1	JLOC1_44628.1	1529	8e-25	1369 - 1428	100	60 / 60	plus
Harvest21	ABC23733	812	3e-25	27 - 86	100	60 / 60	minus	ABC23733
Harvest35	U35_32711	531	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_9979	812	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (531 bp)

>U35_32711 531 Hv_44K_v2
TGCAAAATATGGAGAAATCTTTCAAGAAATATAAATAAGGAAAAAGTTGAGGTTCCACAG
CAGCAAAACGACTTTGACTGTGGTGTCTTTATGCTTTATTACATCGACAAGTTTATTCAA
GAGGAACAAGATAGTTCGACAGGAGTGCGGCCTTTCAAGTTTGGACGCAAGTGGTTCAGC
CCTGAAGAAGCTTCGGCGCTGCGGAAGCGAATACGAGTTCTCCTGTTTGAGATATTTCAG
AATGCTCCACGGAATGATCGAAATTTAGAGTCACATGACGATGATCACTCGGAAGATGAA
GAAGATAAGGTTAGGGATACAATCATGATCGTTTGAATGTAACGGTGAATGAATGAAGTC
AAGCAATGGAAAGATCACGGTGCAGTTTTGCATCAGAACACTGTCTCTGATGGCTGTAGA
TGCGTTGATACAGTCAAGGCTAAGGGTCCCAATTTTGTGTATATGCTGTTTTGTGGACAA
AGTTTGAAAGCTATAACGATGCAGCAAAGCTGACCGATATATCTTATATTT

Homology of Contig U35_32711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None