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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_20636_PI390587928Hv_44K_v2ATCATGAGGACCATGATCATGCTCAGGAGCATTCACATGCACACTCCCTGAAAGATCTTT573GeneList: skyblue3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3531.1381.2291.0370.6290.431
Raw 89.077101.828110.214140.99131.08123.206



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK249958.118022e-24584 - 64310060 / 60plus ABC16412
MLOCMLOC_10321.25252e-24271 - 33010060 / 60minus None
MLOCMLOC_10321.317722e-24227 - 28610060 / 60minus None
MLOCMLOC_10321.113382e-24274 - 33310060 / 60minus None
JLOC1JLOC1_6748.316328e-251215 - 127410060 / 60plus
JLOC1JLOC1_6748.28608e-25443 - 50210060 / 60plus
JLOC1JLOC1_6748.18028e-25385 - 44410060 / 60plus
Harvest21ABC181746373e-25574 - 63310060 / 60plus
Harvest35U35_83116373e-25574 - 63310060 / 60plus



Contig Sequence (637 bp)

>U35_8311 637 Hv_44K_v2
TGCAGGCATTCGGTACGAGGCTCTGCCGTCTCCTCCCCCTGCTGCTCCTGGCCACCGCTC
TCGCCGCCGCGGCTGGACACGGGGATTCCTCCGCGTCCTCATGCCCCTTCCACGGCGGCC
ACGACGGGGAGCCCCACGAGCACCATGACCACGGGCACAGCTGCGGGGGCGCCCACGATG
ATTCCAATCACGACGACGACCACCACCACCACCACAGCCACCATCACCGCGACGAGATCC
AGCGGCTGCTACCGGAGGAACTGGCCGAGGAGGCGGATCTCGAGCTCGAAGGCTTCGCCC
ACGACCACGATCACCACCACGACCACATCCACCGCGATTTCCAGCCAGAGTCGACACCCA
TGGGCGTGTGGTTGAGAGCGATGGGGTGCTCGCTGCTGGTCAGCATGGCGTCGCTCGTCT
GCCTCATCCTCCTCCCAGTAATCCTGTTTCAGGGGAAACCGTCGAAGGCCGTTGTGGATG
CACTTGCAGTGTTTGGGGCAGGTGCAATGCTTGGAGATTCATTTCTTCATCAACTACCTC
ATGCTTTTGGTGGAGGGCACTCTCATTCACATAATCATGAGGACCATGATCATGCTCAGG
AGCATTCACATGCACACTCCCTGAAAGATCTTTCTGT



Homology of Contig U35_8311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None