barSeed - Barley Seed Development Database

Probe CUST_20629_PI390587928

Source Contig U35_8318

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20629_PI390587928	Hv_44K_v2	AGATAGGTGGCGCTGAAAGGCAGATACGAATAGATCGCTTCAATGCCAAGACTTCTACTA	716	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.782	1.005	2.149	1.855	1.040	0.873
Raw	413.004	796.995	1504.793	1878.685	405.431	369.603

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251718.1	2709	2e-24	522 - 581	100	60 / 60	plus	ABC06049 ABC06051
MLOC	MLOC_61346.2	3004	2e-24	268 - 327	100	60 / 60	minus	None
MLOC	MLOC_61346.3	2618	2e-24	103 - 162	100	60 / 60	minus	None
MLOC	MLOC_61346.1	3957	2e-24	268 - 327	100	60 / 60	minus	None
JLOC1	JLOC1_40085.2	3217	8e-25	2680 - 2739	100	60 / 60	plus
JLOC1	JLOC1_40085.1	2899	8e-25	2362 - 2421	100	60 / 60	plus
Harvest21	ABC21824	629	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_8318	777	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (777 bp)

>U35_8318 777 Hv_44K_v2
CATGGATTCTGCAGTTCTGAAAACTATAGAATGGGAGTGCATGATTGTGGATGAGGGGCA
CCGCTTGAAGAACAAAGATTCAAAGTTGTTTGGTCTACTTAAAGATTATAATACTGAACA
TCGTGTTCTCTTAACGGGGACCCCAGTTCAGAATAACCTGGATGAGCTTTTCATGCTGAT
GCACTTCCTCGAGGGTGAAACTTTTGGGAGTATATCTGATCTCCAAGAGGAGTTTAAGGA
TATCAACCAAGACAAGCAAGTCGAGAAGCTCCATGGAATGCTGAAGCCACACCTTCTTCG
GAGATTCAAGAAAGATGTTATGAAGGAACTTCCTCCGAAAAAGGAACTGATTTTACGAGT
CGAGCTGACAAGCAAACAGAAAGAATACTACAAGGCAATTCTCACCAAGAACTACGCCGT
GTTATCTCGTCGCGGTGGTGGACATGTTTCCCTTATAAATGTCGTAATGGAGCTGCGCAA
ACTTTGTTGCCATGGATTCATGACGGATGAACCTGATACTGAGCCTGCGAGCCCAGAGGA
AGGTTTAAGGAGGCTTTTAGATTCTTCTGGAAAGATGCAACTATTAGACAAGATGATGGT
GAAGCTGAAAGAGCAGGGTCATAGAGTCCTTATCTATTCACAGTTCCAACATATGTTGGA
CTTACTGGAGGATTATTTAAGCTACAGGAAATGGAGCTACGAACGTATTGATGGCAAGAT
AGGTGGCGCTGAAAGGCAGATACGAATAGATCGCTTCAATGCCAAGACTTCTACTAG

Homology of Contig U35_8318 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08480.1	1251	6e-160	protein\|CHD3-type chromatin-remodeling factor PICKLE, putative, expressed
Brachypodium v1_2	Bradi1g47367.3	1193	4e-170
Arabidopsis v10	AT2G25170.1	1384	5e-124	\| Symbols: PKL, GYM, CHD3, CHR6, SSL2 \| chromatin remodeling factor CHD3 (PICKLE) \| chr2:10714411-10723763 FORWARD LENGTH=1384