barSeed - Barley Seed Development Database

Probe CUST_20626_PI390587928

Source Contig U35_8322

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20626_PI390587928	Hv_44K_v2	GCTAGCGTTGAACTTTTGCTTAAATGGAGCTCAGTATATTATGTTAGTAAGGATGTATGA	659	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64699.1	1094	2e-24	51 - 110	100	60 / 60	minus	ABC13844
JLOC1	JLOC1_42510.2	1261	8e-25	985 - 1044	100	60 / 60	plus
Harvest35	U35_8322	822	3e-25	660 - 719	100	60 / 60	plus

Contig Sequence (822 bp)

>U35_8322 822 Hv_44K_v2
GGCCTGCAGGCTGCACTGGAGAGAGTTCCGTTGACACGGACGAAAATAATTGCCAATTTG
ATGCAAAAATTCCATAAGATTTGGTATTTTGCCGCTCACCTGCCGATGATGAACTTACCA
AAGGAGTCTATGAAAAACAGAAGGAGAAAATTGACCCAATACTGGACTGGGTCAACACTG
AGTTTGGGTTCAAGCCTGTTGTGTACACAAGTTTTTTAGGAGGGAAGCAGGATGAGCGGC
TAGCTAAGGCTGTAGAAACCGTTCTGAAGGAGGCAAATGATTGTGAACTAGCATCTATTG
ATGCTATGGCTGCAGCAGCCCATTCCTTGGTAATCCCTCTCGCAATCTTCAGAGGAAGGC
TGGGAATTGATGAGTCAATTGAGCTGATCAGACTTGAAGAAGATCACCAGGTCGATCGAT
GGGGCCTGGTTGAAGGAGGCCATGATGTTGATATTGCTGATCTTAAAGTCCAGATGTCAT
CGGCTGTTGTGTTCCTTCAACTTTCATGGCTGAAGTAAAACATTTCTTATCGATAATCTA
TGGAATGGTTTCTCCCTTTTTGTTGCTTGTTTCTTGAGATTGTATATCATGAAGAGCTGT
GGAATAATAATTAGCCGTAGATGGTTATAAAAAAAACAAAGTAATGTTACTCAACCGCTG
CTAGCGTTGAACTTTTGCTTAAATGGAGCTCAGTATATTATGTTAGTAAGGATGTATGAA
AACCCAAATCCTTCTGTATTACTGCGATCTCTGGTTGTGTCGGTGAAAGTGCTATCAATG
GCATACATTATTATTTTTTTGGGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_8322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44940.1	322	6e-78	protein\|ATP12 ATPase, putative, expressed
Brachypodium v1_2	Bradi1g19710.1	307	6e-90
Arabidopsis v10	AT5G40660.1	325	1e-55	ATP12 protein-related \| chr5:16283650-16285161 REVERSE LENGTH=325