barSeed - Barley Seed Development Database

Probe CUST_20624_PI390587928

Source Contig U35_8324

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20624_PI390587928	Hv_44K_v2	CTTCCTATTGGCAGATGTTGCATGATATCCAAAGAAATCATATGTGCTATACACCATCAG	856	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.132	1.027	2.509	2.164	0.840	0.792
Raw	47.849	596.622	1233.309	1655.088	232.644	234.512

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_2249.1	1788	8e-25	1594 - 1653	100	60 / 60	plus
Harvest21	ABC35280	490	3e-25	408 - 467	100	60 / 60	plus	ABC35280
Harvest35	U35_8324	939	3e-25	857 - 916	100	60 / 60	plus

Contig Sequence (939 bp)

>U35_8324 939 Hv_44K_v2
GACAACACCTACAGTAGAGACGCGCCACCCGCCCCACCACACCACTCTGGAATCAGTAGT
CAAGAAGGCAAGAACTCTCCGGTTCCCCGACACCATGCCGCTGGACAAGGGCGCACCGTT
GTTGTGCGCCGGAATCACCGTGTACAGCCCCATGAAGTACCATGGTCTGAACGTTCCGGG
AATGCACCTCGGCGTGCTGGGGCTGGGCGGGCTGGGCCACGTTGCCGTCAAGTTCGGCAA
GGCCTTCGGGATGAAGGTGACGGTGATCAGCTCGTCGCCCGGGAAGAAGCAGGAGGCCCT
CGAGCGGTTAGGTGCCGACGCGTTCGTAGTCAGCAAGGATGCTGAGGAGATGAAGGCTGC
AATGAATACCATGGATGGCATCATAAACACGGTGTCTGCAAACATCCCCATGGCCCCTCT
CTTAGGGCTACTGAAACCCAACGGCAAGATGATCATGGTTGGCCTCCCCGAGAATCCTAT
GGAGATCTCCCCCTTTGCTCTGGTTGCCACGAACAAGACCCTGGCCGGGAGCTGCATCGG
CGGCATGAGGGACACCCAGGAGATGCTGGATCTGGCGGCGAAGCATGACGTGACGGCGGA
CATCGAGGTGATTGACGCCGAGTACGTGAACACGGCCATGGAGCGACTTGCCAAGGCCGA
TGTCAGGTATCGGTTCGTCATCGACATCGGCAATACCCTTGACAACGCCGCTGCCGCCGC
CACCACTGAGTGACTCTGCCTCTCTGTTCTTGTTAGCAGTAACAAGAAACAATCTGAAAT
CATTTTGTGTGTGTGAAAATGTAAACCCGTGTACGTGATGCTTGTGTGTTTTGTTGTATG
TGATCAAGGAAGTCATCTTCCTATTGGCAGATGTTGCATGATATCCAAAGAAATCATATG
TGCTATACACCATCAGTTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8324 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g29470.1	367	1e-103	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g17920.1	372	7e-114
Arabidopsis v10	AT4G37980.1	357	4e-85	\| Symbols: ELI3-1, ELI3, ATCAD7, CAD7 \| elicitor-activated gene 3-1 \| chr4:17852670-17854302 FORWARD LENGTH=357