barSeed - Barley Seed Development Database

Probe CUST_20623_PI390587928

Source Contig U35_8325

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20623_PI390587928	Hv_44K_v2	ACATACATGCATGTATACGGCAGAAGGAAACAAAGATCAGGCAAGGTTCGCAGTTCCAAA	672	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.524	1.390	1.145	0.854	0.371	0.375
Raw	1694.743	2401.363	1742.660	1979.672	312.356	341.892

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52485.3	3587	7e-23	2645 - 2701	100	57 / 57	plus	ABC25397
JLOC1	JLOC1_33637.3	2950	4e-23	2443 - 2499	100	57 / 57	plus
JLOC1	JLOC1_33637.1	3113	4e-23	2606 - 2662	100	57 / 57	plus
Harvest21	ABC25397	740	8e-21	673 - 724	100	52 / 52	plus	ABC25397
Harvest35	U35_8325	746	3e-25	673 - 732	100	60 / 60	plus

Contig Sequence (746 bp)

>U35_8325 746 Hv_44K_v2
TGCAGAGAGGAAAGTGCTCTGGATATGCTTGCCGCTGTACATCATAGGTGGAGTAGTAAC
TTTGGTCGTCCACATGATGACCAACCACAGCAGTAGAAGGATGCTGAGGCAAGTTGCCCG
CTTAATGCCGCCACGACATACATTCTGGGAGGACATTGTCCCTTACGGGGGCTTAATGCT
CGACGGGTTCTTGCTCCCACAGGTCATCTTGAATGCATTCTCAGCCTCCAAAGTCAGAGC
CCTTTCCCCACTGTTTTACATTGGAGGCACCATGCTGCGAGCGCTGCCTCACGCGTACGA
TGCGTACAGGACTCATCACTTTGTGCGCAGCATGAGGCCATCTTACATGTACGCAAGCTC
TCGTGACGACCTCTTCAGCCTCGCATGGGACATCGTCATACCTTGTGGTGCGATCCTGCT
GGCGACGCTCCTGTTCTTTCAGCAGTGGCTCGGGGGCGCCTTCTTCCTCTGCTCCAAGAG
CAGGAAGCCGTCGAGCGAATACGAGATGGTTTCCACGGTCAGCTCTTAGCAAGTTCCTAC
AGCTTCGTCGCAAGATGATTAAATGAATGTAGAGGAGGGGTTTACATATAGATTGAGGCA
TATTGTTTTTCCTGTTTCCTGATGGATGAATATCTACCTTACATTTGCGGCCTGTTTGGG
GTGAAAACTTATACATACATGCATGTATACGGCAGAAGGAAACAAAGATCAGGCAAGGTT
CGCAGTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48370.1	530	4e-79	protein\|expressed protein
Brachypodium v1_2	Bradi2g16940.1	908	4e-85
Arabidopsis v10	None