barSeed - Barley Seed Development Database

Probe CUST_20621_PI390587928

Source Contig U35_8328

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20621_PI390587928	Hv_44K_v2	ATAATGATGAAAAGAATCCGGAAACAGCCCTTTTCAACAAGAGAACGGCACTTCTGAAGA	1327	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.251	0.480	1.489	2.426	1.077	1.165
Raw	4.688	15.798	43.977	113.005	18.229	20.643

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361005	2223	3e-21	1502 - 1561	97	58 / 60	plus	ABC12587
MLOC	MLOC_40722.1	524	3e-21	293 - 352	97	58 / 60	minus	ABC12587
JLOC1	JLOC1_26604.1	419	2e-21	68 - 127	97	58 / 60	plus
Harvest21	ABC16854	1387	3e-25	1328 - 1387	100	60 / 60	plus
Harvest35	U35_8328	1387	3e-25	1328 - 1387	100	60 / 60	plus

Contig Sequence (1387 bp)

>U35_8328 1387 Hv_44K_v2
GGGGAGGACGGCGGCCGCGGCTACGAGCGGGTGGCCATGGACACCCCCGGCGCGTACCGG
CTCGTGGACCGGAGCACCGGAAAGAGCGTCATAGTGTGGGGCGGCGTCGACGACGGCGAG
GATCCCAGCGTGCCATCCCCGGCGGTCCTCTCCAGGGTCACCGCCGACCGCTCCGCCTCC
AAAGGTGCAGCAAATGGGGGGAGTAGTGCAGGTGTCGGGAGCTTCGGGAGACTGAAAGCG
CAGAAAGTGCAAGCTTTAGCTAGGAGATCAGCGGCACAACTCAAGAGGGAGGGCACTTCT
AGCCGCACAAGCATCGCCCAGCGTAACGAGCCTCCGTCTGCCGATTCCGATGAAGAGGGC
AACAATTCTGGAAGAAGGAAGTTTGTCCCGGACCCAGCGCGCCGCGCTAAACCGAATGGT
GACTCTAGGGATGCGAGGACCAGCGCCGTGCGTTCTCTGAATTCTGTCCTGAGGCAATAC
AAAGGTGATGATGATTCAGATTTTTCTGATGAAGAGCCTGCTTCTGGCCCCAAAGTTTGG
GGTAAAGTTGCCGATGTTACGTCTTATAGAAGAGAGGATCGGAAGCAGAAGGTCCCTTTA
GACAGTGGGTTTTTCAGTCGCAGGTCTTTTAAGGAGATTGGCTGCGGCGATGAGATTCTA
GGTGCGTTGAGAACCTTTGGGTTTCCTCAACCATCACATATTCAGGCTATGGCATATGCT
CCTGTCTTGGAGGGGAGGAGTTGCATTATTGCTGATCAAAGTGGGTCTGGCAAGACATTG
GCATATCTTTGCCCTATAGTTCAAAATTTAAGAAAGGAAGAAGCTATGGGGATCCACAAA
CCATCTCCCAGGAACCCACGAGTCGTAATATTGACACCTACTGCTGAACTTTCATCTCAG
GTCCTTCAGAATTGCCGTTCAATATCGAAATCTGGGGTTCCCTTCAGGTCTATGGTTGCA
ACCGGTGGATTTCGACAGAAGACACAGCTAGAAAGCCTTGATCAAGAGCTAGATGTACTT
ATAGCAACACCTGGTCGTTTCTTGTATCTGCTTCAGGAAGGCTTTGTGCAGCTAAATAAC
CTCAGATGTGCTGTGTTTGATGAAGTGGATATTTTATTTAGTGAAGAAGGCTTTGAACAA
GTGCTTCATCAGTTGATTACTATCGCACCAGTGACCACACAGTATCTTTTCGTCACTGCC
ACTCTCCCTCTTGATATATATAACAAGGTTGTTGAAACATTTCCTGACTGTGAGGTGCTC
ATGGGGCCTAGTGTCCACCGGACGAGCGCCCGTCTTGAAGAGATTCTTGTGGACTGCAGT
GGAAATGATAATGATGAAAAGAATCCGGAAACAGCCCTTTTCAACAAGAGAACGGCACTT
CTGAAGA

Homology of Contig U35_8328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01830.1	642	0.0	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g13830.2	623	0.0
Arabidopsis v10	AT3G06980.1	781	3e-122	DEA(D/H)-box RNA helicase family protein \| chr3:2201531-2204662 FORWARD LENGTH=781