barSeed - Barley Seed Development Database

Probe CUST_20617_PI390587928

Source Contig U35_8332

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20617_PI390587928	Hv_44K_v2	ATGGAGTCGTCGCTGATAGCAAAACACCTTCTCCTCTGCTGCCTCTTCCTCGTAGCCTCG	165	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60022.1	2353	2e-24	2002 - 2061	100	60 / 60	minus	ABC14651
JLOC1	JLOC1_39111.2	2176	8e-25	187 - 246	100	60 / 60	plus
Harvest35	U35_8332	622	3e-25	166 - 225	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_8332 622 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGAAACCATAGCGAGCGCGTGTAAGACCAGCGTGCCCTTGC
CCATTCCGACGCATTGCAACGGTCAGCCGAAGCTTACCTAGCCAAGGCCACGCCATCCTC
TCCTCAGCTAGCTAGCCGTATTCCATGAGCGGTGGTGGTGGAGCAATGGAGTCGTCGCTG
ATAGCAAAACACCTTCTCCTCTGCTGCCTCTTCCTCGTAGCCTCGGCGCTCGCCGCCGTC
GCGCAGGCCAAGACGGTGCACGAACACTGGGACATCAGCTACCAGTTCACGCACTCGGAC
TGCGTGCGCAAGCTGGCCGTGACCATCAACGGGGGCACCCCGGGCCCCACCATCCGCGCC
GTCCAGGGCGACACCGTGGTGGTGACCGTCAAGAACCTCCTGATGACGGAGAACGTGGCC
ATCCACTGGCACGGCATCCGGCAGCTGGGCACGCCGTGGGCGGACGGCACGGAGGGCGTC
ACCCAGTGCCCCATCCTCCCGGGCGACACCTTCGAGTACAGGTTCGTGGTGGACCGGCCG
GGGACATACATGTACCACGCGCACTACGGCATGCAGCGCTCCGCCGGGCTCAACGGCATG
ATCGTCGTCGCGGCCGCGCCGG

Homology of Contig U35_8332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20090.1	578	9e-71	protein\|L-ascorbate oxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g28950.1	577	5e-75
Arabidopsis v10	AT4G39830.1	582	3e-55	Cupredoxin superfamily protein \| chr4:18479103-18481184 FORWARD LENGTH=582