barSeed - Barley Seed Development Database

Probe CUST_20609_PI390587928

Source Contig U35_8341

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20609_PI390587928	Hv_44K_v2	AGGCGGTGATATCCTGCTGTTTGTTGTACCAATCATAAGAGTAAATATTGAGATTCGTGT	424	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.359	1.517	1.043	0.924	0.411	0.431
Raw	1705.053	2896.147	1803.190	2478.884	389.098	448.815

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8979.1	771	8e-25	654 - 713	100	60 / 60	plus
Harvest35	U35_8341	529	3e-25	425 - 484	100	60 / 60	plus

Contig Sequence (529 bp)

>U35_8341 529 Hv_44K_v2
CTCCAGGCCAGATGTCAATCACCAAGATTTTTAAGTTTGAACATCGGGGGGAGAACTGGC
CAATAGCTGCAGTTTTTCTGGATCATGCCTGGAAAAAGTTGTGTTGAAGCCCTGATCCAA
TCCGCGGGGTCATCAACCCATGGCTTTGCCTGTAAGCATTGCTCTCTGGGTGAATCTCCT
GCCCTCGTTTTGTGGCGTCAAGTTTTCATCGATGCCGTCTTGTGAAAACCCTTTTTGTTC
ATCTTTACTGGATCCGATTGGGTTGCTTCGGAAAGCTTTTAGCGGGCTCTCTTCAGAGCC
TTGTATTTAGTGCACGTGCACGTTCGCTTGTTTGTTTCGAGTCCAGGAAGCTTACAGAGT
TGAGTGGATGTGTTATAACGTATAGTGTTCCTGTCTTGTCTGTTGAAGCCTGTTGTAAAT
GTGGAGGCGGTGATATCCTGCTGTTTGTTGTACCAATCATAAGAGTAAATATTGAGATTC
GTGTTTTTCCAAATATCGATCAGAATTCGTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_8341 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None