barSeed - Barley Seed Development Database

Probe CUST_20603_PI390587928

Source Contig U35_8347

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20603_PI390587928	Hv_44K_v2	GGAATCGCATACCAGTGGAATTTCATGGTTGAGAACAATTATGGCGACGACGGAATGGAT	813	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.593	0.664	0.902	2.607	1.806	2.907
Raw	3.050	6.749	10.520	45.742	11.640	20.630

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71887.3	1685	2e-24	939 - 998	100	60 / 60	plus	None
MLOC	MLOC_71887.1	3127	2e-24	926 - 985	100	60 / 60	minus	None
MLOC	MLOC_71887.2	2842	2e-24	741 - 800	100	60 / 60	minus	None
JLOC1	JLOC1_47797.1	2010	8e-25	1215 - 1274	100	60 / 60	plus
Harvest21	ABC17209	1073	3e-25	814 - 873	100	60 / 60	plus
Harvest35	U35_8347	1073	3e-25	814 - 873	100	60 / 60	plus

Contig Sequence (1073 bp)

>U35_8347 1073 Hv_44K_v2
AACAACTCCAGCTCCATATCTCTATCTCTCCAGCCATTAATTGATTGTTCGATTGGTTTG
TTGGCATTATCCATTTCTGTTCCTCTTCTCCTCTTTTTCTATAGCTTTCAGATGGGGGGC
GCCTTTACCGCGGCGGCGGCACTGGTTCTTCTACTCATGGCTGGCCTCTTGGGTGCTGCA
ACTGCCATTGTAGGCGACAAGTGCTCGTCGAGTGCGGGCTGCGGTGCTGGGCAGTGGTGC
TTCGACTGCGAGCCGGAGCTCGCCGGCTCCCACTGCGTCCGCTCCGTCGCCTCCGACCCC
TTCCAACTCGTTAATAACTCGCTGCCATTCAACAAGTATGCCTATCTCACGACGCACAAT
GCATTCGCCATTGTTGGGGAACCGTCGCACACCGGAATTCCGCGCATCACCTTCGACAAC
CAGGAGGATACAGTCACCGATCAGTTAAATAATGGTGTACGCGCGCTGATGCTCGACACA
TATGACTTCAAAGGAGATGTATGGTTGTGTCATTCCAGTGGAGGCAAATGCAACGATTTT
ACTGCATTTGAACCAGCACTGGACACTTTTAAGGAAATTGAGGCATTTCTTTCTGCCAAC
CCATCTGAAATCGTTACGTTGATCCTGGAAGATTATGTTAACGCGCCAAATGGCCTGACG
AACGTGTTCAATGCATCTGGCCTGCAAAAGTACTGGTTTCCGGTGTCGAAAATGCCGCAG
AATGGTCAGGACTGGCCTCTTGTCAGTGATATGGTCACAAGCAACCAGCGCCTCCTTGTG
TTCACCTCTGCCAGATCGAAGCAAGCCACAGAAGGAATCGCATACCAGTGGAATTTCATG
GTTGAGAACAATTATGGCGACGACGGAATGGATGCTGGGGAATGCTCGAACCGCGCGGAG
TCCGCGCCGCTCAACGACAAGACCAAGTCACTGGTCCTCATGAACTACTTCCCGTCTGTC
CCTGTGAAGCTGACTGCATGTTTGCAGCACTCCAAGGGCCTCACTGACATGGCTAGTACA
TGCTACAGCGCAGCCGGAAACCGATGGGCTAATTTCGTCGCGGTCGACTACTA

Homology of Contig U35_8347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g30130.1	361	0.0	protein\|phospholipase C, putative, expressed
Brachypodium v1_2	Bradi4g27280.3	360	0.0
Arabidopsis v10	AT1G13680.1	346	1e-132	PLC-like phosphodiesterases superfamily protein \| chr1:4690409-4692702 FORWARD LENGTH=346