barSeed - Barley Seed Development Database

Probe CUST_20601_PI390587928

Source Contig U35_8349

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20601_PI390587928	Hv_44K_v2	TCTTTGACCGTGCTGCCATCGTCAGCGATGGTGACCTACTCACGGCGGATGCATCCTCCG	232	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7057.2	3172	2e-24	1805 - 1864	100	60 / 60	minus	ABC12317
JLOC1	JLOC1_4650.2	3152	8e-25	1800 - 1859	100	60 / 60	minus
JLOC1	JLOC1_4651.2	3004	8e-25	1144 - 1203	100	60 / 60	plus
JLOC1	JLOC1_4651.1	2941	8e-25	1081 - 1140	100	60 / 60	plus
Harvest21	ABC17735	763	3e-25	233 - 292	100	60 / 60	plus
Harvest35	U35_8349	763	3e-25	233 - 292	100	60 / 60	plus

Contig Sequence (763 bp)

>U35_8349 763 Hv_44K_v2
CCGGCCTTCTGCATGGGCGTCTCCGTCGTCGCCTTCGTCGGCGGGTACCCGATGTACCGC
CGGCTCGACCCGGCCGGCAGCCCGTTCACGCGGCTCGCGCAGGTGGTCGCCGCGGCCGTC
CGGAAGCGCCGCGTCCCCAGGGTGGACGACCCCGGGAGGCTGTACGAGAACGACGACATG
GACGCGCCCATCTCCATGTATGGCAAGCTCGTGCACACCACCCAGCTCAGCTTCTTTGAC
CGTGCTGCCATCGTCAGCGATGGTGACCTACTCACGGCGGATGCATCCTCCGGCAAGCAA
CCACCGTCCCAAGTCCCCAACCTGTGGCGGCTGAGCACAGTACACCGCGTGGAGGAGCTC
AAGTCAGTGGTCCGCATGGGCCCGATCTGGGCGGCGGGCATCCTGGTGATCACGGCGTCA
TCGCAGCAGCACACCTTCTCCCTGCAGCAGGCGAGTACCATGGACCGCCGCATCGCTCCG
CACTCGTCCTTCGAGATCCCCGCAGGCTCCATGACCGTCTTCACCATGCTCGCCATGCTC
GCCACCCTCTTCGTCTACGACCGCGCGCTCGTCCCGCTGGCCCGCCGCCGCACGGGGCTG
GACCGTGGCATCTCCTTCCTCCACCGCATGGGCGTCGGGTTCACCATCTCCGTGGGGCGG
CCTCCCTCGTCGCGGGCTTCGTCGAGCGCCACCGTANGGAGGCCGCGGCGGCCGGGGGCA
CCACTGACGCTGGGACGGCCCCTCTGTCCGTGTACTGGCTGGT

Homology of Contig U35_8349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g15370.1	598	1e-99	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi1g43970.1	587	9e-110
Arabidopsis v10	AT1G68570.1	596	9e-73	Major facilitator superfamily protein \| chr1:25746811-25750110 FORWARD LENGTH=596