barSeed - Barley Seed Development Database

Probe CUST_20597_PI390587928

Source Contig U35_8354

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20597_PI390587928	Hv_44K_v2	TCCTCTTGTTCACGTCAGGAATTCAGCGTAATGCATAGTCTCTACAGATTTTTCTGCAAA	572	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.590	1.696	1.059	0.872	0.379	0.456
Raw	214.504	358.958	195.180	255.293	38.305	50.631

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252493.1	1588	7e-23	1532 - 1588	100	57 / 57	plus	ABC21964
JLOC1	JLOC1_7991.1	852	2e-21	799 - 852	100	54 / 54	plus
Harvest21	ABC21964	642	3e-25	15 - 74	100	60 / 60	minus	ABC21964
Harvest35	U35_8354	646	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_8354 646 Hv_44K_v2
GCGCTGTAGTATATAAAGTCCCTGAGTTGAACAATGACGAGATGCTAAAGATTAGTTTGA
GAAGTTTGGAACAAGAAGACACGACTTCTATCTCTCAGGAATATGGGGGCGGTGGGCACC
GAAACGCAAGCTCATTTCTGTTGAGTGTTGCGGAATTTGAGAGGTGGAAGGTTGGAGCTG
AACCTTCGACTGCCTAGCTGGCCCGGCTTTCTCTATTACTCCCATCAAAGAAGGAAGTGC
TAAGGTTCAGAAGGAAGAAGACACAGAAAGATGCAAAAGGATGTGAGCGAGTTGATTTTT
AGGTTCGGGGGCGCAGCCCATCATCACGCGGAGGAGCACATCGCAGATATGTGCAGAGAC
TTGTTCGGCGTTGTGCTATCACGCCAGCCGTATTGTTTGACGCTCGTGAATGTGTTGTGG
AGCAAAGGGTTTGCTTTACCAAGTTTGCTGAAACTGTTGGCTTCAGTGTCTAGTAGTACA
GTACATTGTATGTGTACTTTTTCTGTAGGCTAATCCCCTAAAATGGTGCTGTGAAGTTTC
TGTCTTATGGGGCCCCGCTTGTAATGCCCTATTCCTCTTGTTCACGTCAGGAATTCAGCG
TAATGCATAGTCTCTACAGATTTTTCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None