barSeed - Barley Seed Development Database

Probe CUST_20592_PI390587928

Source Contig U35_8360

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20592_PI390587928	Hv_44K_v2	ATTAAGCCGCGTTCACGTGCATGATGTACCCTCTGTTTGCATTGCAGAGAAAGAAAACAG	631	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.394	1.404	2.307	2.016	0.780	0.704
Raw	32.161	188.041	252.140	340.153	47.608	46.874

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63209.1	1556	2e-24	29 - 88	100	60 / 60	minus	ABC19116 ABC34030
JLOC1	JLOC1_41397.1	1086	8e-25	83 - 142	100	60 / 60	minus
Harvest21	ABC19116	361	3e-25	271 - 330	100	60 / 60	plus	ABC19116
Harvest35	U35_8360	722	3e-25	632 - 691	100	60 / 60	plus

Contig Sequence (722 bp)

>U35_8360 722 Hv_44K_v2
CGCGCTGGATCGAGTTCTGGAGCGACGCGGCCTCGGACCGGCGCCGCCGCGACTCGTCGT
CCTCCGAAGCCTCCACCGCGTCCACATCCTCGTCAGGCTGCTGCTCGCCACCCCGGAGGT
CGACGCCGCGTTGGGTGGACAACTACCTGGACAAGCTCGGATCGGTGCTCAAGAAAGGTG
GCTGGAGGGACAGGGAGGTGGACGAGATGGTCGAGGTGGCCGCGTCCGGGATGTTCGACG
GCGAGGACGCCCCGCCAGCTGCCGACGCGGAGGCCGTGCTCGACACACTGCTGCTGAAGA
CGGACCGGTGCTCGGACTCGCTCCGGCGAGCCGGATGGAGCTCGGAGGACGTGTCGGACG
CGCTGGGGCTGGACCTCCGGCGGTGCAAGGAGCCGCCCCGATCGGCCGTGCGAGTGCCTC
CAGAGATCGCCGCCAAGGTCCAGCGCCTTGCGCGGACGGTGGCGAGGTCGTGACCTGACC
TCACCTCGCCGGCGTCGGCAGTTAATCTCATCTTTTCTTCTTTTCCCCTCGAAGGAGGGA
TCGATCGATTAAACAACAACACTTGTATGTTACTGCTACTAAGTGAGAAAAGTAAACTGG
GCCATGTTCGTGTGCATGGACACGCACGTAAATTAAGCCGCGTTCACGTGCATGATGTAC
CCTCTGTTTGCATTGCAGAGAAAGAAAACAGCGTCCCGGAAATTTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_8360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g32110.1	403	1e-53
Arabidopsis v10	None