- Probe CUST_20584_PI390587928
- Source Contig U35_8371
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20584_PI390587928 | Hv_44K_v2 | ATCCTAGAAACCCACCAACAAAACACGGGGAAGGAGAAGGAGGTCCGTCCGTGGTGGAGT | 62 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.024 | 1.187 | 1.057 | 0.554 | 1.349 | 1.568 |
| Raw | 5.973 | 7.390 | 8.242 | 5.187 | 5.443 | 7.471 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375962 | 3234 | 2e-24 | 64 - 123 | 100 | 60 / 60 | plus | ABC06481 ABC42227 |
| MLOC | MLOC_23242.1 | 701 | 2e-24 | 175 - 234 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_16073.1 | 698 | 8e-25 | 177 - 236 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_8371 | 436 | 3e-25 | 63 - 122 | 100 | 60 / 60 | plus |
Contig Sequence (436 bp)
>U35_8371 436 Hv_44K_v2 AGTGAGCCGCGACGCTGCCCCCACCCACTGGTCGACGCCCCTCCCAAGAACCTCGCCAAG GAATCCTAGAAACCCACCAACAAAACACGGGGAAGGAGAAGGAGGTCCGTCCGTGGTGGA GTGGAGTGGAGGGAGGAAGGCCAGTGAAGACCACGCAAGGCACAGGCGCATTTGCGTGTG CCCGTCCTCGCGTGCTGTCTTCTTCTTCTTCCTCCTCCGTCTCCTCCAGCCCTGCTGTGA TGGCGCGGCGGTGGGCGGCTGCGGGCCTGCTGTGCCTGGCCGTGGCGGCGGCGGCGGCGG GGTCCGTGCTGGCGGCCGCCGTGGACGGCGCGGTCACCTACGACCGGAAGGCGGTGCTCA TCAACGGCCAGAGGCGGATCCTCTTCTCCGGATCCATACATTACCCCCGGAGCACCCCCG AGATGTGGGAAGGGCT
Homology of Contig U35_8371 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |