barSeed - Barley Seed Development Database

Probe CUST_20583_PI390587928

Source Contig U35_8372

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20583_PI390587928	Hv_44K_v2	ATTTGAGCGAGCGAGAGAGCTTTGGCTGTTCATCAGTCTGTAATTAGCCCCCATTTTACT	1056	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.280	1.589	1.227	0.754	0.263	0.314
Raw	1093.585	2120.714	1423.060	1372.864	170.128	219.243

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14451.3	1235	2e-24	1103 - 1162	100	60 / 60	plus	None
MLOC	MLOC_14451.1	1330	2e-24	861 - 920	100	60 / 60	plus	None
MLOC	MLOC_14451.2	1007	2e-24	941 - 1000	100	60 / 60	plus	None
JLOC1	JLOC1_9877.2	1706	8e-25	1274 - 1333	100	60 / 60	plus
JLOC1	JLOC1_9877.1	1653	8e-25	1221 - 1280	100	60 / 60	plus
Harvest21	ABC50040	670	3e-25	69 - 128	100	60 / 60	minus
Harvest35	U35_8372	1184	3e-25	1057 - 1116	100	60 / 60	plus

Contig Sequence (1184 bp)

>U35_8372 1184 Hv_44K_v2
TGCAGGTTTGTCTGGGTTAAAGTTCTCCTTTGGNCTAACTCTAATGACAAGAAAGAAGAA
TCTGAGGGTACTGATAAAAGAGAAATTAGACAAATAGCAGAAAAGATGGACAGAATAGTA
TCATTTGAGCATCCGGTGCAGTCAAATGATGACAAGTCAGCATATGAATCACCGTGCTCG
ACGACAGGAACAGCCAGGGTCAAATATGTTAGAGGAGTCGCTGTGCCGTTAGGAAAAACT
AAGTCTCTTGTTGAGAGATTTGAAAAGAGAGAGAGTTCTACTTCTAGCATTGATTGTTCA
TCGCCAACTGGCATTTGTGGTGATCATACAGTGAAAGCTGATAGCCCTCCCACCAGTTCG
ACAGAAGCAAGTCGCACATATGAAAGGGACCTGTCAACAGTGGACGAGACGACGACTCCA
ATCGATTTGGTGCGGAACCATGATGAATTTATAAATGTTGTAAAATCTCGGTTGACAAAG
CTAGAGATGATGCGGCATGTCTTTAACCTAAATGGCATCAAAGGAGCAATTGCTGCGGTC
GCAAAGTTGCCTGATATCGCTGTTCAAGCCGATGTTGTTAGTACTCTCAAGGGAAAACTT
GGTCTTTTCAACCTAGATATTTTCTCAAGCCTTCTGCCTGTTCTTGCCGGGTTACTGAAC
AGCAAGACTGAAAGGCACACTATTGTTGCTTTGGAGATGTTATTGGATCTTATAAAGATT
TTTGGACCGGTCATTCATTCAACATTGTCAGCTAGTTCACCAGTTGGAGTAGATCTTCAA
GCCGAACAGAGGTTGCAGCGTTGCACCCGGTGTTTTAACCATTTGCAGAAGATTGTGCGA
GCTCTACAACCGTTGATGATGCGGAGCGGCCAGTCGGCGCAACTTGCTCAAGAGCTGAAC
ATGTCCTTGCAAGACCTGGTGGTCTTCTGAAGCCCAAGTTGACGCCGTCAGAGTAGATAC
CATTCTTTTTGCCACAGGAAAATGGAAGCGCCATATGGTGGCGGGGTAGCCTGTTGTTCG
TCGTGGTGGTGTGTAATTCTTGTCCCGTGTTTGTACATTTGAGCGAGCGAGAGAGCTTTG
GCTGTTCATCAGTCTGTAATTAGCCCCCATTTTACTGCGTGGACAGCCCCGGACCGGACG
GACGAGGGAGGTAGTGAAATANATAATAATAAGTGTAAACCGCC

Homology of Contig U35_8372 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57210.1	839	3e-128	protein\|katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
Brachypodium v1_2	Bradi2g51760.1	833	3e-151
Arabidopsis v10	None