barSeed - Barley Seed Development Database

Probe CUST_20576_PI390587928

Source Contig U35_8379

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20576_PI390587928	Hv_44K_v2	CAGCACATCTATCTGTTTGTTGTTCAGATTGACAAATCCATATCGAGCAAAACATGTTTT	686	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.860	1.036	1.217	0.877	0.264	0.389
Raw	500.775	406.959	458.576	519.057	54.850	88.797

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10663.2	1575	7e-23	18 - 77	98	59 / 60	minus	ABC05163
MLOC	MLOC_10663.1	4575	7e-23	227 - 286	98	59 / 60	minus	ABC05163
JLOC1	JLOC1_6994.2	4521	4e-23	4328 - 4387	98	59 / 60	plus
JLOC1	JLOC1_6994.1	1495	4e-23	1302 - 1361	98	59 / 60	plus
Harvest35	U35_8379	767	3e-25	687 - 746	100	60 / 60	plus

Contig Sequence (767 bp)

>U35_8379 767 Hv_44K_v2
GTTTCTATGATTTTTCTTACATATTTCTGTCATTCTCGTTCTTGCTTTCTAATATTGGTT
TTTCACAAGGTTATGATGAACCCAAGTGCATAGTTCATATGATTAAGTAATAATGTTTAC
TTGAACAAGAATAGTCTTTCGCTCCTATCTGATCACCTTATACATTTTACAGCTCGTTTG
GCATATCATTTGGTCTGGAATTCATGGATTTCATTTTTGAATTCCGAACTCAACGCGTTT
GGCTGTCACAGATTTGGGCATAGGAATTCATTCCACAATTCCAGCGAAAGGTTACCATAG
CTAGGCCGAAATCTTTCCCCACACTCTGTCATTCCTGTGGATTTGACGCATCTTCCCCAC
ACCTCCATCCCAATCCCTCTCCTACATCGTGGTCCCTCTCCTCTCCTCCTAGCCAGAGTG
CCAAGGTCACCCCTACGCCGCTGCTTGCCAAGGTCACCTCCTCACCGTCGGTCAGATCGT
GGAGAAGGCGGATGCTGCCGATGGCGGTGAGGATGCTGGATGCTGACGGAAATGTGCGAT
GGTGATGAGGTTGAGCCCATGCTGGAGCCGACCGACGAACCAGGCCTTGTTGGCGTGCCC
ATGCCAGATCAGCGAGCTGTTGCTGAGACCAGGACGATCATACATGAGTGTCTCGGTTGC
GGTTTTCTTTTACTTGCAAGTTGCAACAGCACATCTATCTGTTTGTTGTTCAGATTGACA
AATCCATATCGAGCAAAACATGTTTTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None