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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_20575_PI390587928Hv_44K_v2TTACGCGATCAGTTATCTTGTCTAGGCGTCTAATTTTGACATTTTTTGTATGTTGCAAAC818GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4331.5721.1560.9210.3460.336
Raw 3643.4076349.8474071.0905132.437673.169708.275



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_58525.138312e-24128 - 18710060 / 60minus None
JLOC1JLOC1_38036.238648e-253632 - 369110060 / 60plus
JLOC1JLOC1_38036.138528e-253620 - 367910060 / 60plus
Harvest21ABC232523363e-25200 - 25910060 / 60plus
Harvest35U35_83819553e-25819 - 87810060 / 60plus



Contig Sequence (955 bp)

>U35_8381 955 Hv_44K_v2
GTTCCTCCAGAAGATGTTGTTTTCCATCGTTTCTACATGAACAAGACAGGCCCTATTAAG
CCCAAGGCAAAGAAGAAAGCTTCAGTTCTGGATGAAGATACTGGAGAGCTCTTAGCTGAT
GACGTTGATGATGGCAGTGATGAAAGTGATGACGAGATGCAGGAGCTGGAAGATGAGTCC
TCGGAGGATGGAGAATATGACTACGACAATCTTGACGCCAAGGCATTTGAGGAGGAAGGG
GATTTGCTTAGAGACGACAGTGATGCTGATGTGTTGGATGACATTTCAGATGACGACGAC
GATGATGATGATGAAGATGGTCTTAACATGTCTTTTATGGATGCTGAAGCCCTTGAGAGT
GCTGACGATTCAGATGATGATGTTACTGATGTAAAGGCTGCAGCTGCAGCCCGTGGGCGA
AAGCGAAAGAGCGGCTCAACTCCATTTGCAAGTCTAGAAGAGTACGAACATCTCATGGAG
GGGGAGGCTGAGAAGTCTACGTTGAAGAAGAAGCAGCGGAAGCACAAAGAAGCTGGGGAC
AATGTGGGCCGTAAGGAAAGAGGACAAAAACAGTCGGGATCACGAAAGAGGAAGTCCAAG
AGATCTGAATGAGGATGAGATTATACCATGTTGGAAAATGTTTGTTGCGATAGATTTGGA
AGACACAAGTGGATCTTCTCATAGTGCAAGCGGCTATAACATGTTGGTCTACCTTCTGGC
ACTCGCCGCCACCAGTTCCTCTCTGCCCATCCTTTTGCCCGTGGGGACGCGCTGGCTCTT
GCAGGAAGAAAGAACGGCGTGTGATCAGGCTCGGAGAATTACGCGATCAGTTATCTTGTC
TAGGCGTCTAATTTTGACATTTTTTGTATGTTGCAAACAATTTTTTTTCCTAAATTATGT
AAACTGGGTTCCTGAAGCTATTATCCACCTAAATTTATTACTTTTTCATGAGAAA



Homology of Contig U35_8381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None