barSeed - Barley Seed Development Database

Probe CUST_20571_PI390587928

Source Contig U35_8385

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20571_PI390587928	Hv_44K_v2	TATCGATATTGAAAGACGAGTTTCTGCGTTCGAGAGATTATCCTCAGTGCCCTCCCACTT	612	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.440	1.116	1.338	0.841	0.659	0.519
Raw	148.230	149.436	183.373	153.977	49.730	43.531

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371801	5310	2e-24	2850 - 2909	100	60 / 60	plus	ABC05985 ABC31802
MLOC	MLOC_43633.2	5269	2e-24	2727 - 2786	100	60 / 60	plus	ABC05985 ABC31802
MLOC	MLOC_43633.1	5108	2e-24	2638 - 2697	100	60 / 60	plus	ABC05985 ABC31802
JLOC1	JLOC1_28210.1	5179	8e-25	2637 - 2696	100	60 / 60	plus
Harvest21	ABC18040	676	3e-25	613 - 672	100	60 / 60	plus
Harvest35	U35_8385	676	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_8385 676 Hv_44K_v2
CAGTTCAGGTCCACTGGCAAACAACTTTGAGAGGTCCTGTTGCCGGAATATTGACAAACC
AAAGGGTACTAATTGCCTCTGCTGATCTTGATATACTTTCAAGCAGCTCAACCAAATATG
ATCGTGGTCTCCCATCATATCGGTCAATGTTGTGGGTTGGACCAGCGCTTATCTTCTCAA
GTGCAACTGCAATAAGTATGCTTGGATGGGACAACAAAGTTCGATCAATCCTTTCCACTA
GCTTCCCTCGTTCTGTGTTGCTTGGTGCCTTGAACGACCGTCTGCTGCTTGTGAATCCAA
CAGATATAAATCCGAGACAGAAAAAGGGTGTGGAAATAAGAAGCTGTCTAGTTGGTCTTC
TTGAACCTCTTCTTATTGGATTTGCTACCATGCAGCAACACTTTACTCAAAAAATCGATC
TTTCAGAAGTGCTATACCAAATAACATCGAGGTTTGATAGTCTGCGTGTTACTCCTAAGT
CCCTGGACATATTATCTAAAGGGCCCCCTGTCTGTGGAGACCTTGCTGTATCATTATCTC
AAGCAGGACCTCAGTTTACACAAATCATGCGCTGCAATTACGCAATCAAATCTCTCCGGT
TCTCTGCTGCTTTATCGATATTGAAAGACGAGTTTCTGCGTTCGAGAGATTATCCTCAGT
GCCCTCCCACTTCTCA

Homology of Contig U35_8385 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24260.1	994	7e-131	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g51890.1	1625	7e-130
Arabidopsis v10	AT3G50590.1	1614	2e-93	Transducin/WD40 repeat-like superfamily protein \| chr3:18771292-18779220 FORWARD LENGTH=1614