barSeed - Barley Seed Development Database

Probe CUST_20570_PI390587928

Source Contig U35_8386

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20570_PI390587928	Hv_44K_v2	CATTCTTCAAGAGGTGCTGGGAGGTCATCAAACATGATATCATGCGGGTTATCCAAAAAA	385	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.820	2.545	1.146	0.608	0.211	0.206
Raw	2310.670	3069.750	1259.023	1041.139	131.370	138.859

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13974.3	884	3e-22	535 - 590	100	56 / 56	plus	ABC19105
MLOC	MLOC_13974.2	1978	3e-22	1822 - 1877	100	56 / 56	plus	ABC19105
MLOC	MLOC_13974.1	1978	3e-22	1822 - 1877	100	56 / 56	plus	ABC19105
JLOC1	JLOC1_9512.3	1482	1e-22	1348 - 1403	100	56 / 56	plus
JLOC1	JLOC1_9512.2	2212	1e-22	2078 - 2133	100	56 / 56	plus
JLOC1	JLOC1_9512.1	1955	1e-22	1821 - 1876	100	56 / 56	plus
Harvest35	U35_8386	456	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_8386 456 Hv_44K_v2
GCACGAGGGCCGTGGTGGGGTTGACGTTCATATCGCTGTACGAGGCTGTGGGCATGGCCG
GAAGCTTCTACATCTTCGCGGGGTGCGCAGGAGCGTCATGGGTTTTTGTCTACGTCTTCC
TGCCGGAGACCAAGGGAAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGATTCCGCCA
AGTCGCCATCGCTGACGGCGCAGTGATCAATGATGTGCGATGCCTGCTGGTAACTACGGT
AGAAGGAAGTCCATGTCTGTTGTAATTCTTCCCGGTAAAGACCTGGCACTGTTGGCTCGA
TCAAGCAGTTTGTGTTGAACTTAAAATACTCCGATCGAACAGTGTTGGCACTGTTGGCTC
CTGGCCCAGACCGGTTTCACGGGTGCATTCTTCAAGAGGTGCTGGGAGGTCATCAAACAT
GATATCATGCGGGTTATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8386 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None