barSeed - Barley Seed Development Database

Probe CUST_2056_PI390587928

Source Contig U35_18422

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2056_PI390587928	Hv_44K_v2	AACTGTAGCTGTAAGTTGCAATCTATTCTTCTGGAAAGCAATGCACTGGGTGGAAGATCA	1735	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.433	1.464	1.179	0.848	0.296	0.344
Raw	80.694	129.436	88.975	102.909	12.145	15.929

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_18422	1838	3e-25	1736 - 1795	100	60 / 60	plus

Contig Sequence (1838 bp)

>U35_18422 1838 Hv_44K_v2
TGAGCTCGGTAAACTGCAAGCCAACCGTGGTGACATACAACAGAATAATACACGCTTACG
GCCGTGCAAACTATCTGAGGGAGGCTGTCAAGGTCTTCGAGGAGATGGAGGGAGCCGGTT
ACCAGCCTGACCGCGTCACGTACTGTACGCTGATCGACATCCATGCTAAGTCAGGGTACC
TGGAAGTGGCCATGGATCTGTACGGCAGGATGCAGGAGGTCGGCCTCTCGCCCGATACAT
TCACCTACAGCGCCGTGGTCAACTGCCTCGGAAAAGGGGGCCAGCTCGCGGCCGCCTACA
AGCTTTTCTGCGAGATGATCGACAACGGGTGCACGCCCAACCTGGTCACCTACAACATAA
TAATTGCCCTGCAGGCCAAGGCGAGGAACTATGACAATGTCGTCAAGCTCTACAGAGACA
TGCAGATCGCTGGGTTCCGCCCCGACAAGATAACCTACAGCATCGTCATGGAGGTTCTTG
GTCACTGTGGTCACCTGGACGAGGCCGAGGCCGTCTTCCTCGAGATGAGGCGCGACTGGG
CTCCCGATGAGCCCGTGTACGGCCTCCTGGTGGACCTCTGGGGCAAGGCCGGGAACGTCG
ACAAGGCGTTAGGGTGGTACCATGCCATGCTCCAGGACGGTCTGCAGCCCAACGTGCCCA
CCTGCAACTCCCTCCTCAGCGCCTTCCTCAAGCTCAACAGGTTCCAGGACGCCTACGGCG
TGCTCCAGAACATGCTCGCACAGGGCCTCGTCCCGTCTCTCCAGACCTACACCTTGCTGC
TCAGCTGCTGCACCGACGCGCACGCGCAGATGGGGTTGTGCTGCCAGCTCATGGCCATCA
CCGGACACCCGGCCCACATGTTCCTGCTCTACCTGCCCGACGCCGAGCCCGGCGGCGAGA
ACGTGAGGGACCATGCCAGGTATTTCCTGGACATGATGCACAGCGAGGACAGGGAGAGCA
AGCGGGGCATAATGGACGCGGTCATAGACTTCCTCCACAAGTCGGGGCTCAAGGAGGAGG
CCGGCTTCATCTGGGAGGTAGCCGCGCAGAGGAACGTCTACCCGGACTCCGTCAGGGAGA
AGAGCTCCTCCTACTGGCTCATCAACCTCCACCTCATGTCTGAGGGCACCGCCGTCACCG
CCCTCTCCAGGACGCTCGCATGGTTCCACAGGCAGATGCTGCTCATGGGGTCCTGCCCGG
AGAGGATCGACATCGTCACCGGCTGGGGGAGGAGGAGCAGGGTCACCGGGTCGTCGCTCG
TCCGGCAGTCCATCGAGAAGCTGCTGCATCTCTTCCAGTTCCCGCTCTTCGCCGCGCGCG
GCAACACCGGCTGCTTCGTCGGGTGCGGGGAGCCGCTCAGCCAGTGGCTGCACAACCCCT
ACGTCGAGCGCATGCATCTGCTCTAGCTCTAGTTGTTACTTGTTAGTGCCTGCTACATTA
TTGCTAGCTAGGTTATCATCATCAGCTAGGAATAAACAACTTCATTAGCTTAGCTAGCTG
ATGAACAGGTGCAGTTTTGTTCTTATGGTTATCAAACAGTCTCCTTGGATTGGATGAAGC
ATCTGTTCTAGTTTCATCGACTGTAGCGTCATCTGTTCTAGAATTTGTCTGTAGTGTGGT
GTTGAAACTGAAACTTACTTATCTGTGATGAGAACATTTAGAGATTGCATTGTTGCGTTC
AGGATTATGTAGACAATGGAATTGTTTTATGTTTCAAGTTAAAAAAAAAAAAAAAAACTG
TAGCTGTAAGTTGCAATCTATTCTTCTGGAAAGCAATGCACTGGGTGGAAGATCAGCGGC
CGCTCGAGCATTATGAAAAGGGCCCAATTCGCCCTATA

Homology of Contig U35_18422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g44170.1	860	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi4g00490.1	858
Arabidopsis v10	AT1G74750.1	855	Pentatricopeptide repeat (PPR) superfamily protein \| chr1:28086800-28089367 FORWARD LENGTH=855