barSeed - Barley Seed Development Database

Probe CUST_20563_PI390587928

Source Contig U35_8393

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20563_PI390587928	Hv_44K_v2	CACCTGTACCCCAGTTCTCCATCCATGAATGAATGAATCGGAGCTAGATTTATTTTCAAA	729	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.183	1.453	1.246	0.896	0.288	0.228
Raw	541.022	1068.905	799.053	921.169	102.252	86.193

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66335.4	1442	2e-23	1340 - 1397	100	58 / 58	plus	ABC20025
MLOC	MLOC_66335.1	1486	2e-23	1384 - 1441	100	58 / 58	plus	ABC20025
JLOC1	JLOC1_43697.1	1345	1e-23	1282 - 1339	100	58 / 58	plus
Harvest21	ABC20025	394	3e-25	324 - 383	100	60 / 60	plus	ABC20025
Harvest35	U35_8393	800	3e-25	730 - 789	100	60 / 60	plus

Contig Sequence (800 bp)

>U35_8393 800 Hv_44K_v2
ACTTACGAAGCCAGAGCAGAGTTGCTCAAATTCAAGTTTCTCGTAATGAGTAAGTTTCAG
CTTAATGATGTCTTGCTATACAGAAGGATGGGCCTCTCTGGATGCATGTTTGGATAATAC
TGCTATTGCAGGCTTGGAATAGCCAGTACCAGTAACAATTACGGTATTTGGATCTTCAGT
CGCCTTGGAAGAGCTCGACGGGTTAACATTTTTAGTAGTCTCCTTCAGAGGGCCTAGAGA
GTCAGTCCGGACGTCAGGAATGTCATCCACAGGATCATCACGAGCCGCCGCTTGGTCTTC
GTCAAACTCTGGGACAGAGGTGCTCATACCAACCACCTCAGTTGTCTTAGGAGCAGAAGA
CAAGTCGCTAGTTTTTCTCTTTTTTGCTTGTGCAGCGGCCGCTCGGCGCTAGACTGCTAG
GGCTTTCTCCTCACACCACCACCAGCAGCAGGAGCTCCTCCATTGATCTCTGTAACACCA
GAATGACCACCAGCAGCAGCAGCAGATCATGCCGTGGGCGCGATGAAAATGCAAATGCAG
TAGCGTTAGGTTTCGGATTCATCCTCTGTTGTAAAAACTTAGAGTTAGCCCGCAGCAGTA
GCTCAGCAAGCCAGCAGTCTCTCAGTGTAACCAAGGAACGAACAGCCTGATCCCCACCCA
CCCTCACTGTAACCGTCACTAGTTAACATCTCATCCCGTAGGCCCTAGCTTAATCAGCAG
CATTATTTTCACCTGTACCCCAGTTCTCCATCCATGAATGAATGAATCGGAGCTAGATTT
ATTTTCAAAAAAAAAAAAAA

Homology of Contig U35_8393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None