barSeed - Barley Seed Development Database

Probe CUST_20562_PI390587928

Source Contig U35_8394

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20562_PI390587928	Hv_44K_v2	CATATGCTTTTTCTGTAGCAAGCCATCAATCTCAGGAAAAGGATAAACACTCAAATTCAA	606	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65380.2	2618	2e-24	1106 - 1165	100	60 / 60	minus	ABC17578
MLOC	MLOC_65380.1	3488	2e-24	1250 - 1309	100	60 / 60	minus	ABC17578
JLOC1	JLOC1_43019.1	3568	8e-25	2157 - 2216	100	60 / 60	plus
Harvest21	ABC21282	669	3e-25	607 - 666	100	60 / 60	plus
Harvest35	U35_8394	669	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (669 bp)

>U35_8394 669 Hv_44K_v2
CTAGCTATCCTGCTGGCCCTTACCCATGGAGAAATTTCGATAACTATTTCTTTGGACAGC
ATGATCCTGATCCTCTCCTCTCTTGCCACCATGAAGGTTTCTACCACCAGGCTGCTTGTT
CTTGCTCACATTGCTACCACCGGGAGTTCTTGCCTGTACAGGGAACGCCCCTGGGTTTCA
CTGACCAGAGGGCACCGTATCTTGTGAACAGTTACGGGGCCTATCCTGTGGATGGTCCCT
TGCTTGGTCAGCAAAGGTACAATTCCAGAGGCGCTAATCCTTCCTTGCAGCAGCATAACC
TCAGGGCCAACGTAAGCAAGAAACCTGCACAAACTTGTGAGCCAATTGCTGGTGGTGCTC
CTTTCACCATATGCTACAACTGCTATGAAGTACTGCAGCTACCGAATAAACGCTCCTTGT
TGGGAAAGGAGTATAAATTGCGGTGTGGATCATGCTCACACACAATTGTAATCAAGCTTG
ATGGAACTAGGCTTGATGTATCAGAACTTGCGCCAAGTGCACATTTATCTCCTGCACCTC
AAAATGGCACTGGTGATGACATGGCAGACAACTTGCTTGCTAGTGTTGATGAGAGGCTCC
TTCCGCCATATGCTTTTTCTGTAGCAAGCCATCAATCTCAGGAAAAGGATAAACACTCAA
ATTCAAGCG

Homology of Contig U35_8394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g33320.1	812	2e-116	protein\|extra-large G-protein-related, putative, expressed
Brachypodium v1_2	Bradi1g38390.1	824	2e-140
Arabidopsis v10	None