- Probe CUST_20561_PI390587928
- Source Contig U35_8395
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20561_PI390587928 | Hv_44K_v2 | GGAGAATGTAACATTTCCTGTTGTACAACATAGTACGATTTCACATTCTTACTCAAGTTC | 835 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.714 | 2.130 | 1.105 | 0.835 | 0.454 | 0.585 |
| Raw | 620.352 | 1197.511 | 551.397 | 658.682 | 123.415 | 175.611 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60936.1 | 2714 | 2e-24 | 37 - 96 | 100 | 60 / 60 | minus | ABC18372 |
| MLOC | MLOC_60936.2 | 2467 | 2e-24 | 17 - 76 | 100 | 60 / 60 | minus | ABC18372 |
| MLOC | MLOC_60936.3 | 3037 | 2e-24 | 17 - 76 | 100 | 60 / 60 | minus | ABC18372 |
| MLOC | MLOC_60936.5 | 2888 | 2e-24 | 9 - 68 | 100 | 60 / 60 | minus | ABC18372 |
| MLOC | MLOC_60936.4 | 1889 | 2e-24 | 15 - 74 | 100 | 60 / 60 | minus | ABC18372 |
| JLOC1 | JLOC1_39772.11 | 1857 | 8e-25 | 1747 - 1806 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.10 | 2416 | 8e-25 | 2306 - 2365 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.9 | 2382 | 8e-25 | 2272 - 2331 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.8 | 1763 | 8e-25 | 1653 - 1712 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.7 | 1797 | 8e-25 | 1687 - 1746 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.6 | 1793 | 8e-25 | 1683 - 1742 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.5 | 1831 | 8e-25 | 1721 - 1780 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.4 | 1804 | 8e-25 | 1694 - 1753 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.3 | 1808 | 8e-25 | 1698 - 1757 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.2 | 2420 | 8e-25 | 2310 - 2369 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39772.1 | 1956 | 8e-25 | 1846 - 1905 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18372 | 919 | 3e-25 | 836 - 895 | 100 | 60 / 60 | plus | ABC18372 |
| Harvest35 | U35_8395 | 919 | 3e-25 | 836 - 895 | 100 | 60 / 60 | plus |
Contig Sequence (919 bp)
>U35_8395 919 Hv_44K_v2 CGGGTCTGCAGGAATTCGGCCGAGGATGACACCAGCTTTACTCGGCTTTTTAAGACGATT ATTGCCAAAGTTGTTGAGACATATCTGCCAGGTGCTATTGTTCTTCAGTGTGGAGCTGAT TCATTGGCGCGGGACCGCCTAGGGTGTTTTAATCTTTCAATTGAAGGCCATGCTGAATGT GTAAAGTTTGTTAAGAAATTTAAAATCCCCCTGCTGGTGACAGGAGGTGGTGGGTACACC AAAGAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGGGGTTCTTCTAGACACAGAGCTC CCAAATGAGATCCCTGACAATGAATACATTAAGTACTTCGGTCCAGATTATACATTGAAA GTACCAAATCTGAACATGGACAACCTGAATAGTAAGACGTATCTCAGTTCAATCAAAGTG CAAGTCATGGAGAGTTTGCGGGCCATACAACATGCACCTGGCGTTCAGATGCAAGAGGTT CCACCAGATTTCTATGTCCCAGACTTTGATGAAGACGAGCTGGATCCTGATGAACGCGTT GACCAGCATACCCAAGACAAGCAGGTTCATCGTGACGACGAGTACTATGAAGGCGACAAT GACAATGATCACGATGACGGCGGACATTGAAATCGGAGTCTTGGCGATGCATGTAGGTGG AAGCTGAAAGTCTTTCCTGAGCGGCTGCTGTGCAGTTTAACATCCTGGGTTGGAACATAG TTGGTTGATTGACATTTTAGGATCTACTCCTAACTAACAGCAGCTGCTAGGGCTGGAGAA CATTGTGGGAGAATGTAACATTGTGAGAGAATGTTTCCCAAAAAAGAACATTGTGGGAGA ATGTAACATTTCCTGTTGTACAACATAGTACGATTTCACATTCTTACTCAAGTTCAAAAA TCAAAAAAAAAAAAAAAAA
Homology of Contig U35_8395 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g33480.1 | 385 | 4e-111 | protein|histone deacetylase, putative, expressed |
| Brachypodium v1_2 | Bradi5g09190.1 | 431 | 7e-116 | |
| Arabidopsis v10 | AT3G44680.1 | 426 | 3e-94 | | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426 |