barSeed - Barley Seed Development Database

Probe CUST_2055_PI390587928

Source Contig U35_18423

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2055_PI390587928	Hv_44K_v2	ATCATAATTCAGTCCTGCACGAGAGTGGTGGCTCCGCAAGGAAAGAAGAAAAAGAAAAGC	825	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.871	1.510	1.118	0.810	0.483	0.491
Raw	2261.290	2779.623	1842.970	2029.574	438.681	491.994

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39807.2	1684	2e-24	1081 - 1140	100	60 / 60	plus	ABC13354
MLOC	MLOC_39807.1	1755	2e-24	1162 - 1221	100	60 / 60	plus	ABC13354
JLOC1	JLOC1_25977.1	1939	8e-25	1168 - 1227	100	60 / 60	plus
Harvest21	ABC13354	1411	3e-25	826 - 885	100	60 / 60	plus	ABC13354
Harvest35	U35_18423	962	3e-25	826 - 885	100	60 / 60	plus

Contig Sequence (962 bp)

>U35_18423 962 Hv_44K_v2
GTTGCCCAGGTAATTGAATTTGTGCAGTTCAAAAATCGCTTGCAATGCTCCATGCAGTAT
CTTGCTGTAAAATCTGATTCTGTAATACTGAGCCTGAAGCAGAAGTCGGAGTCTCTTGAG
GAAGTGGAGTCCGTTCTTGAAAATGTGAATCACGGAGGAGGCTTGGTTGATCTATCAAAT
GAAGACAACATGAAACATTTAACTTTTAATGAAGATCTCGAGGCACGCCCTTGGTGGACA
CCAACCACCAGTGTAAATTTTCTTTCAGAACCAATTGATGAAAGTTCAACACCTGCGTGC
TTTAGGGCCAAAGTGTGCAAGCACAAATCTACTGAGAAGGATGGCCCTAAGATGGGAGAT
GCTGAGAGAAAATGTCTTGTCCCCCGGCTTGTTTATCTTTCCATGCGTGGTTGTGTATCT
TCCCTCAGGGAGACTGAGCACAACGGGTCTGTTTCTGATATCACTGTTGGGGAAATGAAA
ACCTTACTTGAGAAATATGCTAGGACTATTGGTTATTCTATGGATGATGCTCTAAGCATG
ATTCTTGGTATATCTTCAGGCAAGAAGTCTATGAAGGATTTTGCTCCTGATATTGTGAGC
TGGATGAGTTTCGCTGTATTTATTAATGCGATGAACCTGTGGTCAAATGAATCAGTGATC
CCCAGAACTGAACCGAGCAGCCCAAGTTCTTGGGAGATTGTGGACAGCTTGGTGAAACTT
TGCATAGAGGAGCACCTGACTGATGCCAATCGAATCCTGACTTGTCCTGGAAATAAAATT
CCACTGTTAGTGCAGATGGTTACGGAGCCCATTTCTTGGCATCTCATCATAATTCAGTCC
TGCACGAGAGTGGTGGCTCCGCAAGGAAAGAAGAAAAAGAAAAGCGGCCCATCGCTGCGA
ACAAACATGCCTCAGTTGCAAGGAATTCAAAGATCTGTTCAGTGCTTGATTGAAACGCTC
CA

Homology of Contig U35_18423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g27870.1	1017	2e-152	protein\|expressed protein
Brachypodium v1_2	Bradi2g29750.1	1015	2e-169
Arabidopsis v10	None