- Probe CUST_20551_PI390587928
- Source Contig U35_39017
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20551_PI390587928 | Hv_44K_v2 | GTTATTTTGTCTGATACTCATGGACTTCAATTACTTGGACGTCACATCAGTTGCTAAAAA | 12 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.893 | 0.374 | 1.029 | 1.264 | 1.316 | 1.141 |
| Raw | 21.579 | 13.497 | 33.880 | 62.759 | 23.740 | 23.137 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC35053 | 242 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus | ABC35053 |
| Harvest35 | U35_39017 | 242 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus |
Contig Sequence (242 bp)
>U35_39017 242 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGCAACTGATGTGACGTCCAAGTAATTGAAGTCCATGAGTATC AGACAAAATAACTGGTTCACAAGCCATAAGACTTTATGGTCCAACTCATCAGTAATCAAA CTGGCAAGTTGAGATTCTATTTATGTAAGGAATTAAAAGCAAGTCCAAGTCCACAAAACA TTGGGCCATAAAGGGATTCCTTCGAGTCAGTATCAGAAATGGAAAAAATATCAGGGCATT TT
Homology of Contig U35_39017 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |