barSeed - Barley Seed Development Database

Probe CUST_20549_PI390587928

Source Contig U35_15060

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20549_PI390587928	Hv_44K_v2	CTGAGTTTTGGCTACCTTAGTAACCGGATATGTTGCAGTTACTTTTGAACTAAATTGTAT	1693	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.223	0.202	0.728	1.865	1.443	1.728
Raw	1148.433	1639.368	5365.923	20380.423	5804.380	7466.353

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249110.1	1843	2e-24	1762 - 1821	100	60 / 60	plus	ABC02595 ABC02596
JLOC1	JLOC1_41882.1	2017	8e-25	1865 - 1924	100	60 / 60	plus
Harvest21	ABC02595	1812	3e-25	1694 - 1753	100	60 / 60	plus	ABC02595
Harvest35	U35_15060	1812	3e-25	1694 - 1753	100	60 / 60	plus

Contig Sequence (1812 bp)

>U35_15060 1812 Hv_44K_v2
CCGCGGCGGCGGCGGCGGCGGAGAGCGGCCTTCCTCTCTCCTCGGCGTCGGGTCTCCCGT
CGGCCAGGACCATGGCTGGCGGTTTTAGAGTGCTGCATCTTGTCAGGCCCTTTCTGGGTT
TCTTACCGGAAGTACAGAGTGCTGATAGGAGAATTCCATTCAGAGAAAAACTCATCTACA
CTGTTATTTCCCTCTTCATTTTCCTAGTGTGCAGCCAGCTCCCGCTCTATGGCATCCATT
CAACTACTGGAGCTGACCCTTTCTACTGGTTGCGTGCTATTCTTGCATCCAACCGTGGTA
CTGTTATGGAGCTGGGTATCACTCCAATTGTGACATCTGGGATGGTGATGCAACTTCTGG
TAGGATCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCACTTCTGAATG
GTGCACAAAAGTTGCTTGGTATCCTCATTGCTATCGGAGAAGCTGTGGCATATGTTTTGT
CTGGAATGTATGGCAGTGTGAGCCAACTAGGAACAGGGAATGCTATTCTCATTATACTTC
AACTTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGATATG
GTTTGGGTTCTGGCATTTCTCTATTCATCGCTACCAACATCTGTGAGAATATCATCTGGA
AGGCGTTTAGCCCCACAACCATCAACAGTGGACGTGGTGCTGAATTTGAAGGGGCTGTCA
TTGGGTTGTTCCACCTCTTGATTACTAGAACTGACAAAGTCCGTGCCCTACGGGAGGCTT
TCTACCGCCAGAATCTTCCCAACGTGACCAACTTACTTGCTACTGTCCTGGTCTTCCTCA
TTGTTATCTATTTCCAAGGCTTCCGTGTCGTGCTTCCAGTGAGATCAAGGAATGCCCGTG
GGCAGCAAGGTTCATATCCAATTAAACTGTTTTACACATCGAATATGCCCATCATTCTGC
ACTCTGCGCTGATTACCAACCTCTACTTTATATCTCAGCTTCTTTACAAGAAGTTCAGTG
GCAACTTCCTGGTTAACCTTCTCGGTATATGGAAGGAATCCGAGTATTCAGGCCATTCTA
TTCCTGTTGGTGGTCTTGCATACTATGTAACTGCCCCATCAAGTTTGGCTGATGTTGTCG
CAAATCCATTCCATGCGCTGTTCTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTCTTCT
CAAAGACATGGATTGAAGTTTCTGGTTCATCAGCAAGGGATGTTGCTAGGCAGCTCAAGG
AACAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACTTGGAGAGGGAGTTGAACAGAT
ACATCCCCACCGCTGCTGCATTTGGAGGAGTCTGCATTGGCGCGCTGACTGTCCTAGCTG
ATTTCATGGGTGCAATCGGTTCAGGAACCGGTATACTGCTTGCGGTCACCATCATATACC
AATACTTCGAGACGTTCGAGAAGGAAAGGGCGACCGAGCTTGGTTTCTTCGGTTTTTGAT
CAAGGACTGAGTGATATGGTGCTAGGGCTAGCTGGTTCTTCTTGCAAGCCGAGATACTGT
CTGGGGACCTTAGATTCAGAAATTGTAGCAGAGTCTGCGTGTGTGTGTGTGTTTTCAGGC
GCATGGTAGCATGTACATCGGCCAAGTGCAGCCATGGCCAATTAGCCGCCAAGTGTTTGT
GTTCAGTGGTCTGCTGAGTTTTGGCTACCTTAGTAACCGGATATGTTGCAGTTACTTTTG
AACTAAATTGTATATTACTTTCTTTGTTTTGCGGCAATCCTCCATAGTCCATACTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_15060 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g11440.1	476	protein\|protein transport protein Sec61 subunit alpha, putative, expressed
Brachypodium v1_2	Bradi1g70160.1	476
Arabidopsis v10	AT2G34250.1	475	SecY protein transport family protein \| chr2:14462635-14464572 FORWARD LENGTH=475