barSeed - Barley Seed Development Database

Probe CUST_20543_PI390587928

Source Contig U35_15065

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20543_PI390587928	Hv_44K_v2	CTGCATCAATAGATGCATGCAGCCATCTTATTAATTATTCCACAAATGTCTAACAAGAGT	1361	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.285	3.110	1.294	0.923	0.670	0.720
Raw	147.205	128.828	50.568	54.183	14.077	16.796

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC29931	222	3e-25	137 - 196	100	60 / 60	plus	ABC29931
Harvest35	U35_15065	1447	3e-25	1362 - 1421	100	60 / 60	plus

Contig Sequence (1447 bp)

>U35_15065 1447 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAAGGCAATCAATCAGTAGCAGCTACCTCCTCCGCTTGCT
TCCTCCTCCCTCCCACCGTGCGTCGCCGATCGAGGACGAAGATGGGGAGCGGCCTGCTCC
CGCTGGCGCTGCTCGTCGTCCTCTCCGCCGCCGCCGCCGCCCCCCAGCTCGCCGGAGCGG
CAGGGGGAGGCCATTCCCTAGGAATCATCCAGAAAGGCATCATACAGACGGTCAACAACC
ATCCCAACGCCGGATGGACGGCTGGACACAACCCCTACCTCGCCAATTACACTATTGAGC
AATTTAAGCATATGCTGGGAGTGAAACCAACACCTCCAGGTTTACTGGCTGGTGTTCGAA
CCAAAACTCATCCAAGGTCAGAGCAGCTCCCAAAGGAGTTCGACGCCAGGTCGAAATGGT
CCGGTTGCAGCACAATTGGGAAAATACTTGATCAAGGTCACTGCGGTTCCTGTTGGGCTT
TTGGAGCTGTGGAGTGTCTGCAAGATCGTTTCTGCATCCATCACAACATGAACATTTCAC
TTTCTGCCAATGACCTAGTGGCTTGCTGTGGGTTTATGTGTGGTGATGGTTGTGATGGAG
GATATCCTATCAGCGCATGGCAATACTTCGTCCAGAATGGTGTTGTTACTGAGGAGTGCG
ATCCATACTTTGATCAGGTTGGCTGCAAGCATCCTGGATGCGAACCTGCTTATCCTACAC
CTGTGTGTGAAAAGAAATGCAAGGTGCAGAACCAAGTTTGGCAGGAAAAGAAACATTTCA
GCATCGATGCATACCAAGTAAACTCTGATCCACATGACATCATGGCAGAGGTCTACAAGA
ATGGCCCTGTAGAAGTTGCTTTCACAGTTTATGAGGACTTCGCACACTACAAGTCAGGAG
TGTACAAGCACATCACAGGTGGCGTCATGGGAGGTCATGCCGTCAAGTTGATTGGTTGGG
GAACCAGTGATGCTGGCGAGGATTACTGGCTTCTTGCAAATCAGTGGAACAGAGGCTGGG
GTGATGACGGATACTTCAAGATCATAAGGGGCAAGAATGAATGTGGCATCGAAGAAGATG
TTACAGCCGGTATGCCCTCGATGAAGAACATCGCCGGTAGCGCCTTTGCAATGTGAAGTT
TGAGCAGCGCCTCGTCCTCTGATGCAGCTGGAATTAGCTATTTGCCTGTCAAATTAAGCG
GGCAAACTAGCATTGATGGTTCCAGGACTATGTATTCTGTGCACTAGCTATGGATGTGCC
CGTTAATAACAATGAAGCAGTTTTTTTTTGTTGAAAAAAAAAAAAAAAAACAGTTATTAT
TAAAGGATATGTGAATGAAAAAGAGGTCAAACCCTCGGCCTCTGCATCAATAGATGCATG
CAGCCATCTTATTAATTATTCCACAAATGTCTAACAAGAGTATACATCNNAAAAAAAAAA
AAAAAAA

Homology of Contig U35_15065 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g24550.5	359	0.0	protein\|Papain family cysteine protease domain containing protein, expressed
Brachypodium v1_2	Bradi1g09730.4	336	0.0
Arabidopsis v10	AT1G02305.1	362	1e-155	Cysteine proteinases superfamily protein \| chr1:455816-457974 FORWARD LENGTH=362