barSeed - Barley Seed Development Database

Probe CUST_20529_PI390587928

Source Contig U35_27043

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20529_PI390587928	Hv_44K_v2	TGGACGCTAAGCATCTTGTTGCAGTAGGAATTGAAGGGTTTTATGGCACTGGAATAGCTG	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369260	1697	2e-24	816 - 875	100	60 / 60	plus	ABC19876
MLOC	MLOC_37544.2	965	2e-24	491 - 550	100	60 / 60	minus	None
MLOC	MLOC_37544.3	928	2e-24	503 - 562	100	60 / 60	minus	None
MLOC	MLOC_37544.4	1412	2e-24	836 - 895	100	60 / 60	minus	ABC19876
MLOC	MLOC_37544.1	1124	2e-24	548 - 607	100	60 / 60	minus	None
JLOC1	JLOC1_24314.7	1308	8e-25	368 - 427	100	60 / 60	plus
JLOC1	JLOC1_24314.6	1227	8e-25	287 - 346	100	60 / 60	plus
JLOC1	JLOC1_24314.5	1001	8e-25	368 - 427	100	60 / 60	plus
JLOC1	JLOC1_24314.4	899	8e-25	368 - 427	100	60 / 60	plus
JLOC1	JLOC1_24314.3	790	8e-25	368 - 427	100	60 / 60	plus
JLOC1	JLOC1_24314.2	833	8e-25	302 - 361	100	60 / 60	plus
JLOC1	JLOC1_24314.1	556	8e-25	134 - 193	100	60 / 60	plus
Harvest21	ABC23901	627	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_27043	627	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_27043 627 Hv_44K_v2
CGGGGCCGGAGGCCGAGCCAGTCGACTAGTCGAGCAATGCGGCGGGAGAAGCGGCTCTAC
AGCTTCCTGGGCCTCCTCCTCCTCCTCGCCGTCGTGTACCTCAACTGGCTCCCGGCCCGC
GACCCCGCCGCTCCGGGCGGCGGCGGCCTCAAGCTGCCGGCGCGCTCCAGATCTCCCCCG
GCCGCTTCAACGAAGCCGTCTTCCAGGTATTGGACTACATTATATATGAAGCTCGGAGAA
ATCATATTAGGTTGATCCTTTGCCTTGTCAACAACCTTGATAACTTTGGAGGGAAGGCCC
AATATGTTAAGTGGGCACAAACAGCTGGAGCTAACTTGACAAATTCAACTGATTCCTTTT
TCTATCACCCAACCATTAAAGGTTACTACAAGGATTATGTGAAGGCAATATTAACCAGAA
GGAACTCTTACAGTGGAATCAGATACTCTGATGAACCTGCTATATTTGCTTGGGAACTCA
TGAATGAGCCTAGGTGTGTATCCAACTCATCTGGTCCTCATCTTCAGGCTTGGATAGTAG
AGATGGCAGCGTATGTCAAGAGTCTGGACGCTAAGCATCTTGTTGCAGTAGGAATTGAAG
GGTTTTATGGCACTGGAATAGCTGAGA

Homology of Contig U35_27043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g20620.1	441	8e-94	protein\|OsMan07 - Endo-Beta-Mannanase, expressed
Brachypodium v1_2	Bradi1g42770.1	437	6e-98
Arabidopsis v10	AT4G28320.1	431	5e-61	\| Symbols: MAN5, AtMAN5 \| Glycosyl hydrolase superfamily protein \| chr4:14018293-14019972 REVERSE LENGTH=431