barSeed - Barley Seed Development Database

Probe CUST_20521_PI390587928

Source Contig U35_39020

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20521_PI390587928	Hv_44K_v2	TTGACTATGCATGCACTCCAGAAGAAGTGCAGCAGCATTTTAATCTTGCGGAACCGTCAA	432	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.316	0.426	0.962	2.017	1.183	1.480
Raw	127.941	274.426	532.658	1844.598	364.153	498.846

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250020.1	979	7e-23	365 - 425	98	60 / 61	plus	ABC03409 ABC03412 ABC52720
MLOC	MLOC_16972.1	1070	7e-23	427 - 487	98	60 / 61	plus	ABC03412 ABC52720
JLOC1	JLOC1_11720.2	843	4e-23	160 - 220	98	60 / 61	plus
JLOC1	JLOC1_11720.1	1001	4e-23	318 - 378	98	60 / 61	plus
Harvest21	ABC35058	555	3e-25	433 - 492	100	60 / 60	plus
Harvest21	ABC03412	1021	1e-23	360 - 420	98	60 / 61	plus	ABC03412
Harvest35	U35_39020	555	3e-25	433 - 492	100	60 / 60	plus
Harvest35	U35_1255	1021	1e-23	360 - 420	98	60 / 61	plus

Contig Sequence (555 bp)

>U35_39020 555 Hv_44K_v2
GCAGGCCAAGGTCGCCAAGGAGATGCAAGGCGGAGATCCTAATGCGACCACATCTGAAGC
AAAAGAAGAGATGGATTCTCGTTCTGTTTTTGTTGGAAATTCTGCTATCATCAAGTCTTT
GAAACCGAAATTTTGGCATCTGGCTGAGTCTCAGTGCAAGTTCTAGTGATAGCTTTAGAG
GGGGCAAGAAAAAAGAGGAAAAAAATCCATGAAAAAAGAAAAAATATTTGAAAAAGTAAA
AAGGAAAAGAATATAGAAAAGGAAAAAAAGAAAAAAAAATACAGTGATAGAAAATGCCCC
CGAAAATGTCAGTAGAGAACTGCTGCATGTACTCCACCTGGCGCTTGAGACTCATACATG
GACTGATGTGGCATGGTATCAATAGCCATCGGTAGATGAGAATCAGTGGCAGGGGTGCAT
ANGCATGACATGTTGACTATGCATGCACTCCAGAAGAAGTGCAGCAGCATTTTAATCTTG
CGGAACCGTCAACCGAGTGACTATCCTGACTGACAAGTTTGGGCAGCCTAAAGGTTTTGC
TTATGTTGAATTTGT

Homology of Contig U35_39020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None