barSeed - Barley Seed Development Database

Probe CUST_2050_PI390587928

Source Contig U35_18428

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2050_PI390587928	Hv_44K_v2	GAGCAGTGATCCCTTTTTTCTCTTTGATATACTTTGGTTCAATGTTTTCCATGTCTAGAT	1185	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.888	2.077	1.197	0.728	0.210	0.263
Raw	527.427	600.770	300.170	288.003	29.831	40.197

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_22239.1	1329	8e-25	1267 - 1326	100	60 / 60	plus
Harvest21	ABC10311	1298	3e-25	1186 - 1245	100	60 / 60	plus	ABC10311
Harvest35	U35_18428	1298	3e-25	1186 - 1245	100	60 / 60	plus

Contig Sequence (1298 bp)

>U35_18428 1298 Hv_44K_v2
CAGCACAAGTCTCGACCGCAGCCGCCGTCAGAGCGCAACGCACGCCCGGGAGCCCACCGA
AGCCCAGTCGCGCGGAGACCCAAACCCAGCGAGCCCTCGCCGCAGATGGCAGTCCCCGGC
GGCCGCAACGGCCTCGTCGAGGACGACGACGTCGCCGACCAGGCCGGCGCCTTCGTCGCC
CCCTCCGACGACGAGGAGGCGCCGCTGCCTCCCCACCTCCAAGCCATCTCCAACGCCGCC
CAGGTGGGCAACGTCAACGCCCTCCGCGCCGCGCTCGATAACTATGGTGGCAGCATTGAT
GATCCAGTTGAAGATGGTGATACTGTGCTTCACCTGGCATGCTTATATGGCCATCTACCT
TGTGTGCAGCTACTGCTGGAACGTGGAGCAAGCTTAGAGTGCAAAGATGAAGAAGGCGCA
ATTCCTCTCCATGATGCTTGTGCTGGAGGCTTCACTGAGATAGTTCAGTACATTCTCAGT
TTTGCTGCAAATGCTGAGGGTTGTGCAACGCGAATGCTCAACACCGTTGATGCTGAAGGC
GATACTCCACTCCACCATGCTGCCAGAGGGGAACACATGGACACCGTCAAGCTTCTGCTC
GAGGCTGGTGCATGTCCCAAGAAGGAGAACACCTACGGGCAGGCAGCCGCAGAGATGGCC
GATCAAGATACCGAAGTCCGGGCCCTGTTAACCGCCAAGCAAGTCGAGGCCAGCATACAT
ATGGCGAACTGATGGATCTGTCGGAGGGAACCCTTGGTTGAAATCGCTCAAATGATGAGT
GGGCAGTAAAATGAGTGGTAGTATTGAACTAATAGTATCTTCATACACAGCTTGCCTACT
ATGAGAATTGCATTTCTGTTGTCACCAGAACTATGGAGTTATGTGTAAAGAGGAGGACAT
GGTGTTTCTCCACTTGCTCTTTGTATCTGTATTTTTGGCGTTATATCAAAGCCACAATCA
GTTGAGCTCTCATGCCCTGCCTTTCCAGCATGATTATTGATTACTCTCACCCTTGAGAAT
TTTGAAAAAGGAAATATTTCGTCCATGACAACCGGAGACTGAATTGCTCAAGTTACTCAG
TGCATGTGAATTTTGAAGGAGGCTTGAATGTTCAGCAATTATAGATGACAGTTAGTAGAG
CTCATCGGTTTGTGTCATTGATCTATGCAAATTTTACATTGGAAAGAGCAGTGATCCCTT
TTTTCTCTTTGATATACTTTGGTTCAATGTTTTCCATGTCTAGATATTGTTGAAACTTTG
TTTGAATATTAATTTATGTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g05260.1	211	2e-104	protein\|ankyrin repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g75360.1	208	1e-119
Arabidopsis v10	AT3G09890.1	206	6e-71	Ankyrin repeat family protein \| chr3:3032678-3034158 FORWARD LENGTH=206