barSeed - Barley Seed Development Database

Probe CUST_2049_PI390587928

Source Contig U35_18429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2049_PI390587928	Hv_44K_v2	CTGCTATAGCCATGCTTTATCTGTACTTAGTAAGTACTAGTAGAATAGCCATATGAATGT	1312	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	23.433	5.591	1.509	0.525	0.356	0.354
Raw	436.703	174.186	39.343	22.366	2.912	4.315

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369669	1470	2e-24	1328 - 1387	100	60 / 60	plus	ABC09465
JLOC1	JLOC1_44323.5	2128	8e-25	1854 - 1913	100	60 / 60	plus
JLOC1	JLOC1_44323.3	1580	8e-25	1306 - 1365	100	60 / 60	plus
JLOC1	JLOC1_44323.2	1721	8e-25	1447 - 1506	100	60 / 60	plus
JLOC1	JLOC1_44323.1	1716	8e-25	1442 - 1501	100	60 / 60	plus
Harvest21	ABC09466	634	3e-25	42 - 101	100	60 / 60	minus
Harvest21	ABC09464	550	3e-25	71 - 130	100	60 / 60	minus
Harvest35	U35_18429	1442	3e-25	1313 - 1372	100	60 / 60	plus

Contig Sequence (1442 bp)

>U35_18429 1442 Hv_44K_v2
GCTCGTTCGTGGAGCAGCAGGATTTGAAATATTTTCCAGGAGATCGAGAGGCGAGGGCGT
GTGCGCCGGCGCAGTGCTTTGTCCCCTTCCCCCCCTCGTCCCAATCCAGAAAGCAGCGTC
CGCCAGACAAAGAAGCAGTCCAGTCGGGTGGAGCGAAGCAACGGGAAACTCCGCCCATCG
GCACGGCACGGCACCGCAGAGAGCGAGAGCGGCCGCCGGCTACTCCACACGACGCAGGTA
AGAAGAGAAGAGATGGTGCACAAGGAGCTGCAGCAGGCATGGTGGTTCGACAGCCACAAC
CTCGCGAGGACGTCCCCATGGCTCGGCAGCACCCTTTCAGAACTGGATGACAAGACCAAG
CAAATGCTCAAGCTGATCGACCAAGATGCGGACTCCTTCGCTCAGCGCGCTGAAATGTAC
TACAAGAAGCGCCCCGTCCTGGTGGACATGCTCGGCGAGCTGTACCGCACGCACCGCTCG
CTGGCCGAGCAGTATGACCTGCTGAAGCATGGCAGCGGCACATGCCGGTCCAAGTTCAAT
CCATCTCCCTGCACCAAGAGCTGGTCTCCAGGGTCCATGGATGGCAAGGCAACCAAGAGC
TGGTCGTCAGGATCCATGGATGGCAAGACAGCAAGAAGCTCTTCCTCCAACTCACTGTGC
TCGGACTCGTATGACTCCGAGTCTGAAGTCGATGACCCTGAAGAAGAGCATGTTGAAAAG
GTTTCTGACGCTGAAGCAGAGGCAGCGGCAAAGCAGGACCGGCTTGACCAAGAAGCAGAG
TTTATGCGCGCCGAGATCAAGAGGCTCAGCGAGCAGAATTCGGAGCTGCAGAAGGCGATC
GAGGAGAACAAGGCGGCTCACGCGGCGGAGCTCGCCGCAAAGGACGAGGAGAAGAGGGAG
GTCATCAGGCAGCTCGCGTCGTCCATCGACATGGTGAAGCAGGAGAACTGCACCCTGCGC
GAGCTCCTCAAGAGCCCCAACCCCAAGCACCACCCCGCCGCGGAGGCCCAGCCCCGCGGT
TTCGATTTCAGGAAGCTGACCAAGGATCTGTTCTCGGCAAAGCTGTTCACCGGACACCGC
AAACACACGGGTCCCATGGTCGCTCTGTGAGCGAGTTTTGGTGCGGCAGAATCATCCAAC
ATGATGAAGAGAGAGAGGAAGTGGCATGATGCGATCTCTCCATCTTTGACATCCAGACCC
ATGAGAATTTCTTATAGCTCCTCATGTGCATATAGGATGGGGTTCTTTTGTCCCCCGTTT
GGTTCTATCCTTGTTCGGGCTTAGCCAGTAGAGAGGATTTTTAACTATGTTGCTGCTATA
GCCATGCTTTATCTGTACTTAGTAAGTACTAGTAGAATAGCCATATGAATGTTTGTATGA
TCGCTTAACTATAGTGAAAACATATTATTATTTTTGTCAAGTATCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_18429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47090.1	295	1e-79	protein\|KIP1, putative, expressed
Brachypodium v1_2	Bradi1g18347.1	295	5e-89
Arabidopsis v10	None