barSeed - Barley Seed Development Database

Probe CUST_20499_PI390587928

Source Contig U35_27052

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20499_PI390587928	Hv_44K_v2	GTGAATCTTCATCAGCCCTCAAATTCTGCAGGGACACAACAAACATTCTGGACCATGTGT	259	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.391	1.075	1.183	0.770	0.563	0.454
Raw	99.287	110.723	116.216	111.544	30.062	27.436

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9787.4	3190	2e-24	373 - 432	100	60 / 60	plus	ABC10037 ABC37003
MLOC	MLOC_9787.1	4099	2e-24	1073 - 1132	100	60 / 60	plus	ABC10037 ABC37003
MLOC	MLOC_9787.2	4178	2e-24	1006 - 1065	100	60 / 60	plus	ABC10037 ABC37003
MLOC	MLOC_9787.3	3865	2e-24	1006 - 1065	100	60 / 60	plus	ABC10037
JLOC1	JLOC1_6347.2	3736	8e-25	956 - 1015	100	60 / 60	plus
JLOC1	JLOC1_6347.1	4052	8e-25	959 - 1018	100	60 / 60	plus
Harvest35	U35_27052	499	3e-25	260 - 319	100	60 / 60	plus

Contig Sequence (499 bp)

>U35_27052 499 Hv_44K_v2
TCGAGCACTGTTGGCCTACGGTAATGATGACACACTAATAAAGAGACAATACCGTAAGCT
TGCGCTTTTGCTGCATCCCGACAAGAACAAGTTTGCAGGTGCAGAGGCAGCATTTAAATT
AGTGGGAGAAGCAAACATGACGCTTACAGACAGCTCAAAACGTACTGCCTATGACATGAA
AAGGAGAGTCTCAGTCAGAGTTGGTGCAGCAAGACCATCCCCTTACCAGCAGTCAAGGAG
AGCTGCTCCTGTTAGACCTGTGAATCTTCATCAGCCCTCAAATTCTGCAGGGACACAACA
AACATTCTGGACCATGTGTTCAAGTTGTGGCATGAGATATCAGCACTACACTGCGATGTT
GAAGAAAGCTATCCGTTGTCAGAGTTGTTTGAAGCCTTTTATTGCACATGATATAAATGA
GCAAACTGTTCCTTCCGGGGCAGATCGACAGTATCCTGGGGTAAAAAATGCAGGGGCACC
ACAGAATTTGCAGGCTGGC

Homology of Contig U35_27052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g34440.1	1019	2e-67	protein\|dnaJ domain containing protein, expressed
Brachypodium v1_2	Bradi1g27400.1	1018	3e-77
Arabidopsis v10	None