barSeed - Barley Seed Development Database

Probe CUST_2045_PI390587928

Source Contig U35_20743

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2045_PI390587928	Hv_44K_v2	GATGGGAAATTCAAGGATGAATTTCTGTGTTCTTGTCTAAGTTGATTGTCGAAAAACATG	1118	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.654	1.841	1.277	0.683	0.238	0.295
Raw	956.899	1617.632	998.601	838.232	102.976	138.591

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_28505.1	1586	8e-25	1498 - 1557	100	60 / 60	plus
Harvest21	ABC13758	1230	3e-25	1119 - 1178	100	60 / 60	plus	ABC13758
Harvest35	U35_20743	1230	3e-25	1119 - 1178	100	60 / 60	plus

Contig Sequence (1230 bp)

>U35_20743 1230 Hv_44K_v2
GGTCATGGCCAAGGCGATGAACAGCGTGCCAGATGCTGGGGCCGGCCGTGTCAAGCACCT
GGTAAATGCTTTCGAGAGCCTGCTCTCCATCTCCGGCGCTACCGCTGATGCCGAAAGGGC
AGGCGAGGAGGCCTGGGTGCTGCCCGGGTTGCAGCCGTGGAAGGAGGGGAGTGAGGGCTC
GCCGGTGGCGTTGTTCTCCTCGTCCGATTTCACGAACATGGGGCCAACCAGGCTTTGCAG
TTCACTCGATGGCAAGAGCAACAGATCTAGCTGGGACAGCCAGACTGGAGGACGCAGGAG
CCGGCGGAACTCATCTGAATCACTAAGGAGCAGCTGGAATAAAAAGCTCAAGGTCACTAG
CCAACACCCTTTCAAGCTGAGAACAGAGCAAAGGGGAAGAGCCAAAGAACAACAGTTTAT
TCAGAAAGTACAGGAGATGCTGATTGAGGATGAGAAGAAGCGCATACATATTGCTCAAGG
ACTTCCGTGGACAACAGATGAGCCTGAGTGCTTGATTAAGCCACCAGTCAAGGAAAGGAC
TGAGCCCGTCGACCTTGTTCTCCATAGTGATGTGCGCGCAATTGAACGTGCTGAATTTGA
TCAATATGTTTCAGAGAGGCTCAAGATGGGTGAGGAATTAAGATTGGAGCGGGAGCGCCA
AGAGAAATTAGAGGAGGAAGAAATAATAAAGCAGCTGAGGAAAGAGCTTGTTCCTAAAGC
ACAGCCAATGCCGTATTTCGATCGTCCATTCGTCCCCAAAAAGTCATCAAAGACAATTAC
AATTCCGAAGGAGCCGAGCTTTCATCTCCGGCCTGAAAGGTTATCATGTGATGCGTGGTC
ACTGGAAAGCTGAAGACATGGCCCCGCAAGCAACACGAATGTCGGCTGCATTTAGCAAGA
GCCGCAGAGCATCATCAACTCCCATGATTAAGATGCTCCCCATTCTTTCAAGTGCCTAGC
TTCTTGTTAATGTCTCCATGTGCAACGAGCGGTCTATGTAGCTTGGGTGATCTCCGACTT
TTGTTCTGTGTACATGCTTTATGAATATCAATAGCTCTGTGCTTCAGATGCATCCTCCAC
CCCCAGGGTTGAGACAGCTTGTTGTACAAGAGACCCCAGATGGGAAATTCAAGGATGAAT
TTCTGTGTTCTTGTCTAAGTTGATTGTCGAAAAACATGAAACACCAATGTGTTGATAAAT
ATGTGGATTTTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_20743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11400.2	289	7e-129	protein\|targeting protein-related, putative, expressed
Brachypodium v1_2	Bradi1g70210.1	492	1e-132
Arabidopsis v10	AT3G01015.1	488	1e-52	TPX2 (targeting protein for Xklp2) protein family \| chr3:1798-4017 REVERSE LENGTH=488