- Probe CUST_20454_PI390587928
- Source Contig U35_39047
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20454_PI390587928 | Hv_44K_v2 | TCTGTGTATACTCTGTTATCTCAGACTTTATGGATGGTACCATTCAGACCTGTTGAGACC | 59 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.261 | 1.210 | 1.051 | 1.106 | 0.649 | 0.622 |
| Raw | 3324.577 | 4732.637 | 3808.230 | 5963.430 | 1293.592 | 1352.358 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_33718.1 | 2262 | 8e-25 | 2097 - 2156 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC35100 | 211 | 3e-25 | 60 - 119 | 100 | 60 / 60 | minus | ABC35100 |
| Harvest35 | U35_39047 | 211 | 3e-25 | 60 - 119 | 100 | 60 / 60 | minus |
Contig Sequence (211 bp)
>U35_39047 211 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGTCTCAACAGGTATACAGTGTATATATATATATATATATATG GTCTCAACAGGTCTGAATGGTACCATCCATAAAGTCTGAGATAACAGAGTATACACAGAG AACAGACTGTCCACTAGAGCAGAAACACGACATAATAACACACATCTCCGAAAAAGCAAA AGCTCAACCATGAAAAATTCCGGACGCGTGG
Homology of Contig U35_39047 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |