barSeed - Barley Seed Development Database

Probe CUST_20446_PI390587928

Source Contig U35_21470

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20446_PI390587928	Hv_44K_v2	CCTGGGAGTTGATATATACTACGTACTATACAATTGAAGAGACAATTACTTATTTGGCCA	1124	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.988	1.830	1.223	0.755	0.284	0.337
Raw	1623.347	2372.321	1387.899	1365.406	177.033	230.336

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371682	2496	2e-24	2416 - 2475	100	60 / 60	plus	ABC14943
MLOC	MLOC_54564.2	1048	2e-24	881 - 940	100	60 / 60	plus	ABC14943
JLOC1	JLOC1_35121.2	1898	8e-25	1787 - 1846	100	60 / 60	plus
JLOC1	JLOC1_35121.1	2180	8e-25	2069 - 2128	100	60 / 60	plus
Harvest21	ABC14943	1201	3e-25	1125 - 1184	100	60 / 60	plus	ABC14943
Harvest35	U35_21470	1201	3e-25	1125 - 1184	100	60 / 60	plus

Contig Sequence (1201 bp)

>U35_21470 1201 Hv_44K_v2
AATTGAAGGCAACCGAGAGTAAAATACCTATAAATGTTCGAAAGCCAAAAGTGGAACAAC
TGGAGCAGATATCTCAGAATGTAGCAGCAGTGCTTGTTAAATTCCCCAATCTACAGCAAC
TAGGTAAACGGGCTTTTGTGACCTATCTCAAGTCAGTGTACCTCCAGGGGGACAAAGAGG
TGTTTGATTTGAGCAGGTTCTCTGCGGAGAGTTTTGCTGCATACGCCTCTTCGCTTGGTC
TTCCTGTTACCCCTAAAATCCGCTTCGTAAGCCACAAGAAGAATGTGTCGAAGAAAGATA
TGGAGGACATTGGTGTGAAACAGATGAAACACAAAGCTGAAGTTATTGAAATAAAACCAC
AGGTCAAGCGTGATATGCTCGCAGATGATGGACCCGATGATGATATCCTTTATCCGAAGA
AGCCCAACCCAGATGCAAATATTTATGGTGGACTAGATGAGATCCTTTCTCCCAAAGTGC
CTGGCGCTGATACACATATGGAAGCAGAAAAAATCGAAGAGCTGGTAGCGAGGCCCTTGA
AAAAGAAGAAGCTGAAGATAAACATGCACAGGCCTGTGGGAACAAGGGTCAAGTATGATG
ATGAGGGCAATGCGATTGATCCTCTTGCGTCTTTAGCCGAAGAAGTGGGCCCAGAAGACG
TGATTCACAAGGATAAAATTCTGCAGAGGTATGCAGAGATGCTGAGAGAAATGCAGGAGG
ATGACAAGGAGGACAAGGCCCAGCACAAGAAGAGTTTGCAGGAGAAGAAGTTTGAGAAGA
AGATGAAACTGAAGCGCAGGCGACAGGAGGAAACCGATGCGGTGTCTGACGACAGCGGCT
CAGAGTCTGACAGAAACACGAACACGTCCTCCAAGGGTAAAAAGAAGTACTTCAACAACA
GCGACGATGATGAAGGTGGCCATGCAGCAAAGGGTGGGGACCTCCTCGCACAGCAGGAGG
CACTGGCACTGAAGCTTCTCGGTAAAATGCACCACTAAACTCCTGTGTCTGATGGTGTTT
TGTGTTGGTGCAGCAATGCTGTGTATGTACCGCGTGATTGGCGGTTATAGGTTAGTGAAC
TCTCCACAATGGAGACGGAATTTTGATGTGGCACTGTATGGTTTCCTGGGAGTTGATATA
TACTACGTACTATACAATTGAAGAGACAATTACTTATTTGGCCATAAAAAGTTATTTTCT
T

Homology of Contig U35_21470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g33340.1	773	1e-120	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g26197.1	765	6e-152
Arabidopsis v10	None