barSeed - Barley Seed Development Database

Probe CUST_20442_PI390587928

Source Contig U35_21474

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20442_PI390587928	Hv_44K_v2	TTATTTCAGTCTTCCGGCGATGTGCTTTCATTGGAAGGACATGTTTCCGTGACAACGAAG	716	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354140	1919	2e-24	1703 - 1762	100	60 / 60	plus	ABC23472
JLOC1	JLOC1_40969.1	2030	4e-23	175 - 234	98	59 / 60	minus
Harvest21	ABC20039	827	3e-25	719 - 778	100	60 / 60	plus
Harvest35	U35_21474	825	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (825 bp)

>U35_21474 825 Hv_44K_v2
GCCCGGACAGCCCTCGGACGCGGACCTCGGGGAGCTGCTCCCGGAGGGGTTTTTGGAGAG
GACAAAGGAGAAGGGCATGGTGTGGCCGACCAAGGCTCCGCAGAAGGAGATCCTGGCGCA
CGCCTCTGTGGGGGGCTTCGTGACGCACGGCGGGTGGAACTCGACCCTGGAGAGCCTGTG
GTTCGGCGTGCCGATGGTGCCATGGCCGCTGTACGCGGAGCAGCACCTGAACGCGTTCAC
GCTGGTGGCCTACATGGGCGTGGCCGTGGCCATGGAGGTGGACAGGAAGAGGAACAACTT
CGTCGCCGCGTCGGAGCTGGAGCGGGCCGTGAAGGCGCTCATGGAGCGCGACTCCGAGGA
GGGGAAGAGGGCGAGGGAGAAGGCCGCGGAGATGAAGGCAGCGTGCAGGAAGGCCGTCGA
GGAGGGCGGGTCCTCCTACTCTGCCCTGGGGAGTCTCTCCGAGGAGATAATCAATGGAGC
GAATTAGTAATTCGAGAATGCCAGGGCGTTGTGGTTGCAGGCTGCAGTTCTTGTTCTTCC
TGCTGATCATTCCGGGTTTTGTGCCGGCATCGCGAGCAATCCGCATGCGGTCTCTAGACC
TAATAAAACTCCATGCTACTACAAACTAATCCGTGGTTGGATAGTCAGAAGAGTGTGGTA
TCCCTTGTCAGAATTCAAGTCCTAGACTTGACATTGGTACTTCTATTTTCCTGAATTTAT
TTCAGTCTTCCGGCGATGTGCTTTCATTGGAAGGACATGTTTCCGTGACAACGAAGGCGT
CAGTGACGACTTCGTCAATCTTAAGATGATGTGTCGGCTTAGTCT

Homology of Contig U35_21474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32020.1	475	4e-60	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g26760.1	478	3e-63
Arabidopsis v10	None