barSeed - Barley Seed Development Database

Probe CUST_20439_PI390587928

Source Contig U35_21477

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20439_PI390587928	Hv_44K_v2	CATTCCACATGCCAAGAACTCCATTCCATATCTTTAGATGCAGTTATCTTGCATTAAAAA	644	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.263	0.809	2.835	2.480	1.032	0.740
Raw	803.587	3893.070	11747.667	15741.490	2350.313	1832.760

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7985.1	2771	3e-22	2014 - 2069	100	56 / 56	plus	ABC16437
JLOC1	JLOC1_5289.1	2431	1e-22	1765 - 1820	100	56 / 56	plus
Harvest21	ABC16437	716	3e-25	645 - 704	100	60 / 60	plus	ABC16437
Harvest35	U35_21477	716	3e-25	645 - 704	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_21477 716 Hv_44K_v2
GGTCCCGCGTCGCGTCCCACGGTGCTGGACGACACACCGGTGACCGTGCACACGGTGGAC
AGCGTGCTGCTGCCGCCGGAGCTCTTCGGTGGCGCCCCGTCGCCGGCACCCGGAGCGTCA
GCCGATTCACCAGCGTCGGCCCCTGCACCGGAAACCTCCTCCGCGCCGGCGCCCTCTCCC
AAGCACGACAAGAAGAAGCCCAAAGGTAAGTCGCCAGCGCATTCCCCACCCGCGCCGCCG
GCCGATTCCCCTGACAATGCCCCCGCCGACGCGCCGGATGGGGAGGGAGACGAGGAGGCG
GACAAGGCCGACAGCAAGAACGGCGCGACCGCGGTGGGCATGAGCATTGCGGCCATGGTG
GCCTCTGTCGCTCTCGTCGGCGCGTCACTCCTCTGATCCGCCCAAGCGTTCGACATCGAG
CGCTCGTTTTGTTTTCCTCTGGGCACGCATGATGTGATGCACCTCGGTCTCGCTTGTGAG
TTCTAGAGCCATTGAAATGCTCGTCCGAAGTTGTTATACTTCTTCCTGGTTTGGATCATT
TGGGCGATTGTGATAACCTTCCTTGGTAGTTTCAGTAGCTGCGTAGTAGTACTAGTACAA
GTTTATTGAGTTTGATTTTGCTATGCTCGTTCCTGTTGGGGATGCATTCCACATGCCAAG
AACTCCATTCCATATCTTTAGATGCAGTTATCTTGCATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21477 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None