barSeed - Barley Seed Development Database

Probe CUST_20435_PI390587928

Source Contig U35_33451

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20435_PI390587928	Hv_44K_v2	AGTGACTACTTCGCAATGATATAGACAAGTACTGACAGAAATTGCTTAAATGATGTCAGA	347	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16235.2	2178	9e-22	2089 - 2150	97	60 / 62	plus	None
MLOC	MLOC_16235.1	1546	9e-22	800 - 861	97	60 / 62	minus	ABC28802
JLOC1	JLOC1_11169.1	1273	5e-22	1177 - 1238	97	60 / 62	plus
Harvest35	U35_33451	425	3e-25	348 - 407	100	60 / 60	plus

Contig Sequence (425 bp)

>U35_33451 425 Hv_44K_v2
GGCAGCTTTCTTCCTTAGGCTTTGCTGGATGCCGTCAGCAGTAGCCAAAGCAAAGAAGGG
AAGGCAAGTAACTACATTCAAGAGGCTATGGCAATTCCATTCTTAATCGGACCGAATATT
GCAATAGACATGGCCTTGGGGAGTCTACTGTTAGTTATCTGGAAGAAAACAGATAAGAAA
AGCGCAAATATGCTTGCAGTTGTAGTAGCATCAGGTTTGATCTGTGGAGATGGACTTTGG
GCATTGCCATCAGCACTACTTTCAATTTTCCAAATCGAGCCACCCATCTGCATGAAGTTC
TTGTCTAGTCATCAGACCGAGGTAGTGCGGGAGCACTTCCTACCCAAAGTGACTACTTCG
CAATGATATAGACAAGTACTGACAGAAATTGCTTAAATGATGTCAGATCATATTGTTATC
AAGTT

Homology of Contig U35_33451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None